PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa002405
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C2H2
Protein Properties Length: 595aa    MW: 68613.7 Da    PI: 4.8543
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58691279PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-47527PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011317338122
                EEETTTTEEESSHHHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                + C  Cgk F++  + k+H ++
  Lsa002405 317 FYCVVCGKKFKSDKQWKNHEQS 338
                78*****************876 PP
2zf-C2H210.80.0015565585121
                EEETTTTEEESSHHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                ++C  Cg  F ++  L++H++
  Lsa002405 565 HECDTCGVNFDSRTKLHKHLS 585
                78*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1101.9E-2221108IPR001623DnaJ domain
SuperFamilySSF465651.7E-2124114IPR001623DnaJ domain
SMARTSM002718.7E-202789IPR001623DnaJ domain
PROSITE profilePS5007618.412897IPR001623DnaJ domain
CDDcd062572.00E-162886IPR001623DnaJ domain
PfamPF002261.1E-192994IPR001623DnaJ domain
PRINTSPR006251.5E-133048IPR001623DnaJ domain
PRINTSPR006251.5E-134863IPR001623DnaJ domain
PRINTSPR006251.5E-136989IPR001623DnaJ domain
PROSITE patternPS0063607493IPR018253DnaJ domain, conserved site
SuperFamilySSF576675.41E-14308359No hitNo description
SMARTSM004514.6E-5314348IPR003604Zinc finger, U1-type
SMARTSM003550.77317341IPR015880Zinc finger, C2H2-like
PfamPF121713.4E-10317342IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS501579.037317346IPR007087Zinc finger, C2H2
PROSITE patternPS000280319341IPR007087Zinc finger, C2H2
PROSITE profilePS501579.951565594IPR007087Zinc finger, C2H2
SMARTSM003555565589IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280567589IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
XNIKGSKTLV DETTTAPTDT MTSPEKRCLY EVLGLQRDCT ADEIRSAYRK LALQRHPDKL  60
IKSGVSEAEA TASFQELVNA YEVLSDVRER TWYDSHRSQI LFSGSNPNNS SSGSAVVPDL  120
LSFFSNSVYS GFSDKGKGFY KVYADVFDKI YRNELKFAKT LGLGNVVKEA PLMGNLDSPY  180
AQVNAFYGYW LGFVTVMDFV WEDEYDANAG PNRKSRRMME DENKKIRKKA KREYNETVRG  240
LAEFVKKRDK RVIDMQMKRN EEIEKKKEEE RARKKEMERE KAERARLYEE PDWAKMEDSD  300
EVVVEEEEEE DERKNEFYCV VCGKKFKSDK QWKNHEQSKK HKEKVAELRE AFEEEEEEEE  360
EEEVTENKDD LQSEDIDDGE VIVDEVEELK EKFEEVIIEK EETAHDEEKD DDENSLEAML  420
SWNKNKKKPK KKVYVEVEEE EVDLMEYNNK KGRRKRGGKK DTATKPEDEE QQKIDKPEIS  480
GNADVDNKSD DDDDGSHIEK PSSSLSKPCV ETETNVEEAN EPNVKIKVVK QAPASKVINK  540
KEGNSKGKNS TRGKKQKATS RNSGHECDTC GVNFDSRTKL HKHLSDEGHA AIKSR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223231KKIRKKAKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023753889.10.0DNAJ protein JJJ1 homolog
SwissprotQ9C9111e-165JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A2J6M0B40.0A0A2J6M0B4_LACSA; Uncharacterized protein
STRINGXP_009595027.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-141DNAJ heat shock N-terminal domain-containing protein