PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa002443
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ZF-HD
Protein Properties Length: 202aa    MW: 21705.8 Da    PI: 7.0837
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S32122446PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer109.61.7e-3445102359
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                   v+YkeClkNhAas+Ggha+DGCgEfmps++ + +++++lkCaACgCHRnFHRr++++
    Lsa002443  45 VVVYKECLKNHAASIGGHALDGCGEFMPSPTCTpTDPKSLKCAACGCHRNFHRRNPST 102
                  689****************************999********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-224699IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.4E-2946100IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.8564899IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.5E-314899IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MDLKHPTTTI PEPESDTPPR SQSIKKLLSF QNGKPHHHHP PPSTVVVYKE CLKNHAASIG  60
GHALDGCGEF MPSPTCTPTD PKSLKCAACG CHRNFHRRNP STTSLPPSPE TTSLISIAPT  120
KPPPPPPPPP TPPSPPPQPT NYAFGGHLLL SLSTAADQTH TTATPMAIMT SXKEAVPDEI  180
QSGSERKDDD XCRXIRVEDA EM
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023731362.19e-80zinc-finger homeodomain protein 9-like
SwissprotQ9LXG02e-34ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A2J6KL332e-78A0A2J6KL33_LACSA; Uncharacterized protein
STRINGA0A087GV623e-37(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.13e-32homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]