PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa002494

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bZIP

Protein Properties

Length: 566aa MW: 61878.8 Da PI: 6.9838

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-4373	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.3	2.5e-11	425	483	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i eLe kv++L++e ++L +l l+ +a l+s++ Lsa002494 425 KRAKRILANRQSAARSKERKMRYITELEHKVQTLQTEATTLSAQLTLLQRDSAGLTSQN 483 9****************************************************999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.7E-18	421	485	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.875	423	486	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.4E-11	425	482	No hit	No description
Pfam	PF00170	6.7E-10	425	483	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.78E-11	425	476	No hit	No description
CDD	cd14703	3.17E-24	426	477	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence Send to blast
MGDTEEGNSD MIQRVQSSFG TSSSSVPKQQ QQKPVNFNQL DIPQLNTAQF RGQTRQFSPN 60 YNLDNSSKRV GIPPSHPSFP PVSPYSQIPV TQSSGNTHKI GGSQSFNHSN HSPGPSHSRS 120 LSQPSFFPLD SLPPLSPSPY RDSPSARSSD QVITDVSMED RDANAHSLLP PSSPFARSNS 180 GNSTRTENLP PRKAHRRSNS DIPFGFSTIL QSSPPLIPLR TPNTLDRVTS SNNQASKPIQ 240 LVKRESSWEK SGGEGNAEGM GERKSEGEVV DDLFSAYMNL ENLDTLNSSG TDDKQGTENR 300 EDLDSRASGT KTNGGDSSDN EATSSVNDKG IKRSAGGDIA PTTRHYRSVS MDSFMGRMNF 360 ADESPKLPPS PGGHIGQLSP NNSIDSNSNT NTFSLEFGNG EFTGAELKKI MANEKLAEIA 420 LSDPKRAKRI LANRQSAARS KERKMRYITE LEHKVQTLQT EATTLSAQLT LLQRDSAGLT 480 SQNNELKFRL QAMEQQAQLR DALNEALTAE VQRLKITTAE LNGDTAKFSQ LSISSQMFQL 540 HMQQQQQQQQ TEQQNGGAAT KHESNQ

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence Send to blast

MGDTEEGNSD MIQRVQSSFG TSSSSVPKQQ QQKPVNFNQL DIPQLNTAQF RGQTRQFSPN  60
YNLDNSSKRV GIPPSHPSFP PVSPYSQIPV TQSSGNTHKI GGSQSFNHSN HSPGPSHSRS  120
LSQPSFFPLD SLPPLSPSPY RDSPSARSSD QVITDVSMED RDANAHSLLP PSSPFARSNS  180
GNSTRTENLP PRKAHRRSNS DIPFGFSTIL QSSPPLIPLR TPNTLDRVTS SNNQASKPIQ  240
LVKRESSWEK SGGEGNAEGM GERKSEGEVV DDLFSAYMNL ENLDTLNSSG TDDKQGTENR  300
EDLDSRASGT KTNGGDSSDN EATSSVNDKG IKRSAGGDIA PTTRHYRSVS MDSFMGRMNF  360
ADESPKLPPS PGGHIGQLSP NNSIDSNSNT NTFSLEFGNG EFTGAELKKI MANEKLAEIA  420
LSDPKRAKRI LANRQSAARS KERKMRYITE LEHKVQTLQT EATTLSAQLT LLQRDSAGLT  480
SQNNELKFRL QAMEQQAQLR DALNEALTAE VQRLKITTAE LNGDTAKFSQ LSISSQMFQL  540
HMQQQQQQQQ TEQQNGGAAT KHESNQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023755254.1	0.0	uncharacterized protein LOC111903729
TrEMBL	A0A251RRD2	0.0	A0A251RRD2_HELAN; Putative basic-leucine zipper (BZIP) transcription factor family protein
STRING	Solyc01g110480.2.1	0.0	(Solanum lycopersicum)
STRING	XP_009804619.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38900.3	1e-121	bZIP family protein