PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa002509

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

BBR-BPC

Protein Properties

Length: 330aa MW: 36645.3 Da PI: 9.2921

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58687455	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-8227	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	354.9	1.7e-108	1	330	1	301
GAGA_bind 1 mdddgsre..rnkg.yye...pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla. 92 md++g+re r+k+ + + ++ +s+k q+m+++aerda+i+ernla+sekkaa+aerdma+lqrd+a+aern a++erdn++++l+++ens++ Lsa002509 1 MDESGHREngRQKPpQGQwlmQHqPSMK-----QIMTIMAERDAAIQERNLAISEKKAALAERDMALLQRDSAIAERNTAIMERDNAITTLQYRENSMNn 95 8999998878888732222222234454.....**************************************************************999 PP GAGA_bind 93 ...........salpvgvqvlsgtksidslqq.lsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak.kkkkksekskkkvk 179 s +p+g+q+++ +k++++ + l++++++ + ++ +p ++ ++ +ke+k + k+ + ++k+k + +k ++ ++ + Lsa002509 96 snnnnnsnntpSPCPPGCQISRSVKHVHHPHAyLQHHEMGGGIGDSIPTSPPAPEPKSRRVKRVKETKPPAKKTSRMSKKVKMECdDLNKAMFEEPHDWN 195 99*999999************99977777777766665555545555555555555555555544433333333332233443333333333 PP GAGA_bind 180 kesader...................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKm 260 + +k+e+k++dl+ln+v++Dest+P+PvCsCtG+ r CYkWGnGGWqS+CCttt+S++PLP +++r+aR++grKm Lsa002509 196 ------KggddsgggggggvddlnrgVKSEWKDQDLGLNHVAFDESTMPIPVCSCTGVFRPCYKWGNGGWQSSCCTTTMSMHPLPSLPNKRHARVGGRKM 289 ......13334468999******************************************************************************* PP GAGA_bind 261 SqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 S+++f+kl+++LaaeG+dlsnpvDLk+hWAkHGtn+++ti+ Lsa002509 290 SGSVFNKLISRLAAEGHDLSNPVDLKEHWAKHGTNRYITIK 330 **************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	7.2E-96	1	330	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	5.1E-149	1	330	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MDESGHRENG RQKPPQGQWL MQHQPSMKQI MTIMAERDAA IQERNLAISE KKAALAERDM 60 ALLQRDSAIA ERNTAIMERD NAITTLQYRE NSMNNSNNNN NSNNTPSPCP PGCQISRSVK 120 HVHHPHAYLQ HHEMGGGIGD SIPTSPPAPE PKSRRVKRVK ETKPPAKKTS RMSKKVKMEC 180 DDLNKAMFEE PHDWNKGGDD SGGGGGGGVD DLNRGVKSEW KDQDLGLNHV AFDESTMPIP 240 VCSCTGVFRP CYKWGNGGWQ SSCCTTTMSM HPLPSLPNKR HARVGGRKMS GSVFNKLISR 300 LAAEGHDLSN PVDLKEHWAK HGTNRYITIK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023731918.1	0.0	protein BASIC PENTACYSTEINE6 isoform X1
Swissprot	Q8L999	1e-136	BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBL	A0A2J6KJR6	0.0	A0A2J6KJR6_LACSA; Uncharacterized protein
STRING	XP_002510492.1	1e-161	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.1	1e-136	basic pentacysteine 6