PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa002516

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

WRKY

Protein Properties

Length: 181aa MW: 20220.4 Da PI: 9.2848

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58678098	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106	1.9e-33	9	67	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s+fprsY+rCts C vkk+vers++dp++v++tYeg+H+h+ Lsa002516 9 LDDGYRWRKYGQKAVKNSPFPRSYHRCTSVACGVKKRVERSSDDPSIVITTYEGTHTHP 67 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.8E-32	2	69	IPR003657	WRKY domain
SuperFamily	SSF118290	4.05E-29	3	69	IPR003657	WRKY domain
PROSITE profile	PS50811	31.25	4	69	IPR003657	WRKY domain
SMART	SM00774	1.1E-37	9	68	IPR003657	WRKY domain
Pfam	PF03106	1.3E-26	10	67	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MTKSDIDHLD DGYRWRKYGQ KAVKNSPFPR SYHRCTSVAC GVKKRVERSS DDPSIVITTY 60 EGTHTHPYPM TPRGSIGILP ESAGYGGLGG GDGLGVSSFL FAQPHYQQQQ LQPYFHNQTS 120 TSSSLSFSTT NSSAHPSSYS HFLQERRVFP SPSSSLLRDH GLLQDVVPFQ IRKDEPKKEQ 180 N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-28	2	70	10	78	Probable WRKY transcription factor 4
2lex_A	5e-28	2	70	10	78	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023738959.1	1e-132	probable WRKY transcription factor 48
Swissprot	Q9FGZ4	1e-52	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	A0A103XGE2	1e-99	A0A103XGE2_CYNCS; DNA-binding WRKY
STRING	cassava4.1_011940m	2e-69	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	1e-47	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]