PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa002657

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Dof

Protein Properties

Length: 333aa MW: 37198.8 Da PI: 9.1715

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58689856	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-19311	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.8	1.4e-39	42	102	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ Lsa002657 42 PHEALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 102 67899*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	43	100	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.2E-34	44	100	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	46	100	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	48	84	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MASGVHVMEK PIQLQQQHHH QQQQQQQQQQ HQLQQQQQQH QPHEALKCPR CDSSNTKFCY 60 YNNYSLSQPR HFCKACKRYW TRGGTLRNVP VGGGCRKNKR VKRPITTTVH AAANTNTNPN 120 HNHNPNPRPN PNLDHNHLQS STTSNSNSNH HLNPLFYGLL PQNPNYPRSD ARVSSVNENL 180 VSGYDLPHQP HMNVQGLGFS SMGQGGSLVA NHGHNSNLTF SNYNSSMYGG GSTTSSTSAP 240 TMASLLASSL NHQQQRFMGF ANYDGGSMVK DLKMEEARNR MEWNNNNFHV HNKHDQIEAA 300 VSSDPNSLLW DTDGGGWQLD PSTNIGSSVP SLI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023744503.1	0.0	dof zinc finger protein DOF1.4-like
TrEMBL	A0A251V2G3	1e-154	A0A251V2G3_HELAN; Putative zinc finger, Dof-type
STRING	EOY28202	3e-69	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	5e-36	Dof family protein