PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa002713
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family AP2
Protein Properties Length: 404aa    MW: 45111.9 Da    PI: 8.4099
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58682276PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-43686PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.61.7e-143594155
        AP2  1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55
               s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  Lsa002713 35 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqvRKgRQVYLGGYDKEDKAARAYDLAALKYWG 94
               57*******************666665587447**********99*************98 PP
2AP251.82e-16137188155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV+++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  Lsa002713 137 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 188
                57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.3E-1735104IPR016177DNA-binding domain
PfamPF008472.1E-113594IPR001471AP2/ERF domain
CDDcd000181.76E-2035104No hitNo description
Gene3DG3DSA:3.30.730.104.0E-1536103IPR001471AP2/ERF domain
SMARTSM003801.8E-2836108IPR001471AP2/ERF domain
PROSITE profilePS5103218.86136102IPR001471AP2/ERF domain
PRINTSPR003672.8E-63748IPR001471AP2/ERF domain
PfamPF008472.5E-11137188IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-18137197IPR016177DNA-binding domain
CDDcd000187.68E-24137198No hitNo description
Gene3DG3DSA:3.30.730.109.9E-18138196IPR001471AP2/ERF domain
SMARTSM003801.3E-32138202IPR001471AP2/ERF domain
PROSITE profilePS5103218.966138196IPR001471AP2/ERF domain
PRINTSPR003672.8E-6178198IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
RQQMEVATTI GSESGGVTTE AVPRKSIDTF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR  60
EGQVRKGRQV YLGGYDKEDK AARAYDLAAL KYWGTTTTTN FPISNYEKEI EEMKHMTRQE  120
YVASLRRKSS GFSRGASIYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFG TQEEAAEAYD  180
IAAIKFRGLN AVTNFEINRY DVKCILESTT LPVGGAAKRL KDAEQAAATE LLRAAKDDHL  240
TTQLTHEGLN SYGTMTWPSS INYHHQALAQ AQAQPFSMHY PQHYNVSNQQ RLWCKQEQQE  300
PDGQSFQDLQ QIHQFFQPAP NSSVLHNLMN LDSSSMEHSY SSGGGGDHQV VGYGGGGYMN  360
QIMATATTAD SSHDGDGNLY YQHQGSGFGG WVPTAIPTLP ARTA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023754605.10.0AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ8LSN21e-135BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A2J6LYT00.0A0A2J6LYT0_LACSA; Uncharacterized protein
STRINGEOY097221e-171(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-132AP2 family protein