PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa002776
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family NAC
Protein Properties Length: 297aa    MW: 33879.7 Da    PI: 4.9307
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58683460PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.63.1e-50211551128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                lppGfrFhPtdeel+v+yL++k +++       +  ++i+evd+yk++Pw+Lp+++  ++kewyfF++rd+ky++g+r+nr+t +gyWkatg dk++ +k
  Lsa002776  21 LPPGFRFHPTDEELIVHYLCRKSQTTAeivgvAPPPSIIAEVDLYKHDPWELPEMALFGTKEWYFFTPRDRKYPNGSRPNRVTGNGYWKATGADKPIRTK 120
                79********************9999877666333458***************77667999*************************************98 PP

        NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   +++vg+kk Lvfy g+  kg kt+W+mheyrl
  Lsa002776 121 sdPNTVVGIKKALVFYAGKGVKGIKTNWIMHEYRL 155
                766677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-6016184IPR003441NAC domain
PROSITE profilePS5100557.62221184IPR003441NAC domain
PfamPF023653.7E-2722155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MRSPSKSVTK RVRDAEAELN LPPGFRFHPT DEELIVHYLC RKSQTTAEIV GVAPPPSIIA  60
EVDLYKHDPW ELPEMALFGT KEWYFFTPRD RKYPNGSRPN RVTGNGYWKA TGADKPIRTK  120
SDPNTVVGIK KALVFYAGKG VKGIKTNWIM HEYRLDMPNS TSSKHTNSTI SKLDDWVLCR  180
LYNKKNNPNE RIIPEDNNVH HTRDLHPASP LEESQSNNSD SVNSFENLDG EFEGDDVMFL  240
SDLPPESLTK VNGTSEQITV ENLMQRDDDD DGNEWLDNLS LEDLYHCLEE LPPNHDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-81101864170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023741751.10.0NAC domain-containing protein 67-like
SwissprotQ52QH42e-81NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLA0A2J6MAV10.0A0A2J6MAV1_LACSA; Uncharacterized protein
STRINGVIT_06s0004g00020.t015e-92(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.13e-77NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]