PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa002854
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family TALE
Protein Properties Length: 462aa    MW: 53225.4 Da    PI: 6.3004
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58692047PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-33910PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.21.6e-093373741954
                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                Fe   n+yp+ +e+  LA+++gLt +q+ +WF N R +
  Lsa002854 337 FEHflNPYPKDSEKIMLARQTGLTRSQIANWFINARVR 374
                665559******************************88 PP
2BELL98.17.1e-32203274172
       BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                e+q+lq+k++kL sll+eVd++Y+ y++ql++v +s ++vag+g+a++Yt+lA ++iSrhFrcL+d i +qi
  Lsa002854 203 EKQDLQNKIVKLFSLLDEVDRKYREYCQQLRIVEGSLDMVAGCGAARSYTALANQTISRHFRCLRDGINDQI 274
                6899******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.7E-43127272IPR006563POX domain
PfamPF075264.3E-39133270IPR006563POX domain
PROSITE profilePS5007112.357315378IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-27317390IPR009057Homeodomain-like
CDDcd000864.39E-11318379No hitNo description
SMARTSM003899.5E-9318382IPR001356Homeobox domain
SuperFamilySSF466892.31E-17319384IPR009057Homeodomain-like
PfamPF059207.8E-18335374IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MATYYPSSYL STQQQLDSYQ ESPCPPIDIM YQNHNSTDAS FLELLTTNPQ SNPQNLSRVE  60
NHQNLQYQEL SLSLGMQITS SMDLPSFQYN YLNPHLQDSS GHGSRSNKME NIDYLSFDRA  120
VNNQIPSGVV ARIYSSRYLK PSQELLEEVA NLHEAIKQLK MNKRNNFQKI GVDRYDENGS  180
RIDFQSVPLE SATSSSGELS ASEKQDLQNK IVKLFSLLDE VDRKYREYCQ QLRIVEGSLD  240
MVAGCGAARS YTALANQTIS RHFRCLRDGI NDQIQVIRQK LGEQDDSSER VLPRLRNVEK  300
QLRQQRNLHP LGAMRHSWRP QRGLPEGSVS ILRAWLFEHF LNPYPKDSEK IMLARQTGLT  360
RSQIANWFIN ARVRLWKPMV EDMYKEEFND QDVNCRSSPK NAHKPAIDQL SPSDDKDKEL  420
QRNMSSMAVH NVQSSDSNPE YVNDLADQYR FDDPQLLTDF VV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-14324381562Homeobox protein Meis2
3k2a_B3e-14324381562Homeobox protein Meis2
5bng_A3e-14324381158Homeobox protein Meis2
5bng_B3e-14324381158Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023767177.10.0BEL1-like homeodomain protein 3 isoform X1
SwissprotQ9SIW11e-102BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBLA0A2J6L6L00.0A0A2J6L6L0_LACSA; Uncharacterized protein
STRINGEMJ276131e-122(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-101BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]