PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa002907

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

WRKY

Protein Properties

Length: 444aa MW: 49159.2 Da PI: 8.9779

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-26100	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.7	6.7e-30	184	243	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt + +Cpv+k+v+r+aed +v+++tYeg+Hnh+ Lsa002907 184 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVSsSCPVRKHVQRCAEDRSVLITTYEGTHNHP 243 58************************999**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.8E-31	169	243	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-26	177	244	IPR003657	WRKY domain
PROSITE profile	PS50811	28.105	179	245	IPR003657	WRKY domain
SMART	SM00774	1.3E-34	184	244	IPR003657	WRKY domain
Pfam	PF03106	2.2E-26	185	243	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
XASSSMEKSM FSFFKVNEEH DDQTIVSKTS AQDVEMGQVR QENQKLKHTL SMVLKDYNSL 60 QTHYNDFFQQ EIPKNTKNLV TNQEGDHGNE LISLSLGTLS SYKQKDSQQK VNCFSKTKDG 120 GDEQELKLGL GCEFDMKKDE KNKNLEPPVH NLKSERREDN DLLDQIPLKK ARVSVKVVCD 180 TQTMNDGCQW RKYGQKIAKG NPCPRAYYRC TVSSSCPVRK HVQRCAEDRS VLITTYEGTH 240 NHPLSVSATA MASTTSAAAS MLKSTSSTSQ PGLTTTATST SSSTATFSGH HGTTYNSRPP 300 HQYPFYLPNT TISTYQSHPT ITLDLTTNPH FYKSTSSNFL RTQPRFSSSS CLNFSSPTSS 360 SSSSMESNYK NPINFSYLGR QTSYETLYQN PSNDNFQSKS NSSNHSPETI AAATKALTAN 420 PSFRSALAAS ITSLVRNVGG GARI

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

XASSSMEKSM FSFFKVNEEH DDQTIVSKTS AQDVEMGQVR QENQKLKHTL SMVLKDYNSL  60
QTHYNDFFQQ EIPKNTKNLV TNQEGDHGNE LISLSLGTLS SYKQKDSQQK VNCFSKTKDG  120
GDEQELKLGL GCEFDMKKDE KNKNLEPPVH NLKSERREDN DLLDQIPLKK ARVSVKVVCD  180
TQTMNDGCQW RKYGQKIAKG NPCPRAYYRC TVSSSCPVRK HVQRCAEDRS VLITTYEGTH  240
NHPLSVSATA MASTTSAAAS MLKSTSSTSQ PGLTTTATST SSSTATFSGH HGTTYNSRPP  300
HQYPFYLPNT TISTYQSHPT ITLDLTTNPH FYKSTSSNFL RTQPRFSSSS CLNFSSPTSS  360
SSSSMESNYK NPINFSYLGR QTSYETLYQN PSNDNFQSKS NSSNHSPETI AAATKALTAN  420
PSFRSALAAS ITSLVRNVGG GARI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-21	174	244	7	76	Probable WRKY transcription factor 4
2ayd_A	4e-21	176	244	2	73	WRKY transcription factor 1
2lex_A	4e-21	174	244	7	76	Probable WRKY transcription factor 4
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023742990.1	0.0	probable WRKY transcription factor 72
TrEMBL	A0A2J6JVE2	0.0	A0A2J6JVE2_LACSA; Uncharacterized protein
STRING	XP_010256554.1	2e-95	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18860.1	3e-47	WRKY DNA-binding protein 61