PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa002920

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

NAC

Protein Properties

Length: 318aa MW: 36409 Da PI: 6.1839

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58684610	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-4131	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.5	1.7e-55	13	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrFhPtdeel+++yL +kv++ ++++ +i evd++kvePw+Lp +++ +e+ew+fF+ rd+ky+tg+r+nrat++gyWkatgkdke+++ +++lv Lsa002920 13 LPPGFRFHPTDEELISHYLYPKVSNINFSA-LAIGEVDLNKVEPWELPWRANLGEQEWFFFCVRDRKYPTGSRTNRATSAGYWKATGKDKEIFK-EKSLV 110 79***********************999.67***********8888999***********************************.999 PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+kktLvfykgrapkgektdWvmheyrl Lsa002920 111 GMKKTLVFYKGRAPKGEKTDWVMHEYRL 138 **************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-61	4	163	IPR003441	NAC domain
PROSITE profile	PS51005	57.766	13	163	IPR003441	NAC domain
Pfam	PF02365	1.3E-29	14	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MAHTFVHKDQ IDLPPGFRFH PTDEELISHY LYPKVSNINF SALAIGEVDL NKVEPWELPW 60 RANLGEQEWF FFCVRDRKYP TGSRTNRATS AGYWKATGKD KEIFKEKSLV GMKKTLVFYK 120 GRAPKGEKTD WVMHEYRLDG KFSTINLPKS SKGEWVISRV FYKTTGGKKI SISALLRMKN 180 GNTYEHDFGS ADLPPLMEIS SVEGGSRTET SHVTCFSNSM EEQKPKNEEI MGSWSSGNSL 240 MESRTDNVCF LSNQMAPSVE SYQYQDTTWM QDPSILKILL EANNDSSIRQ NLKTELVDDQ 300 EYGMNLGGQV DLDNIWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-53	10	169	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-53	10	169	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-53	10	169	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-53	10	169	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	5e-53	10	169	17	174	NAC domain-containing protein 19
3swm_B	5e-53	10	169	17	174	NAC domain-containing protein 19
3swm_C	5e-53	10	169	17	174	NAC domain-containing protein 19
3swm_D	5e-53	10	169	17	174	NAC domain-containing protein 19
3swp_A	5e-53	10	169	17	174	NAC domain-containing protein 19
3swp_B	5e-53	10	169	17	174	NAC domain-containing protein 19
3swp_C	5e-53	10	169	17	174	NAC domain-containing protein 19
3swp_D	5e-53	10	169	17	174	NAC domain-containing protein 19
4dul_A	4e-53	10	169	14	171	NAC domain-containing protein 19
4dul_B	4e-53	10	169	14	171	NAC domain-containing protein 19
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Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:18305205, ECO:0000305\|PubMed:15723790}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023745826.1	0.0	NAC domain-containing protein 92-like
Refseq	XP_023749842.1	0.0	NAC domain-containing protein 92-like
Swissprot	Q9FLR3	1e-110	NAC79_ARATH; NAC domain-containing protein 79
TrEMBL	A0A2J6MA24	0.0	A0A2J6MA24_LACSA; Uncharacterized protein
STRING	XP_009768516.1	1e-127	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07680.1	1e-113	NAC domain containing protein 80

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vidal EA,Álvarez JM,Gutiérrez RA Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav, 2014. 9(3): p. e28501 [PMID:24642706] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643]