PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa002950
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family M-type_MADS
Protein Properties Length: 281aa    MW: 31734.2 Da    PI: 10.3926
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58678471PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.72.1e-2067111549
                SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
     SRF-TF   5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                 +sn  vtfskRr+g++KKA+ELS+LC++e+ +i+fs+  k++ +
  Lsa002950  67 KESNLLVTFSKRRAGLFKKASELSILCGVEITIIVFSPGKKVFSF 111
                578889********************************9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-2755114IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.9655115IPR002100Transcription factor, MADS-box
CDDcd002654.42E-3156127No hitNo description
SuperFamilySSF554559.94E-2556129IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-175777IPR002100Transcription factor, MADS-box
PfamPF003194.4E-2265111IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-177792IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-1792113IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
XGSSTCRNLF GRDEPFKYIY PSRFFKEIKE RNTRPALLVL QFSQVLDPMM PRKTKGRQKI  60
QMTRMAKESN LLVTFSKRRA GLFKKASELS ILCGVEITII VFSPGKKVFS FGHPSVEMIV  120
DRFLSQNPPP SSSTSQLMDA HRNAKIHELN RQLTYVISQS EFEKNKSEHL SEIRKAGQDN  180
HWWEAPIENL RLPELEQLKV AMEALKKNIG EQSKRHLVEA ANSMPIVPIS GSMGIAGDSV  240
EDKGSGLGLS MTSHGVWPFQ SLNQASSSRH LEIDGSNSRR F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-1756135281MEF2C
5f28_B3e-1756135281MEF2C
5f28_C3e-1756135281MEF2C
5f28_D3e-1756135281MEF2C
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023763222.11e-171agamous-like MADS-box protein AGL62
TrEMBLA0A2J6LF121e-170A0A2J6LF12_LACSA; Uncharacterized protein
STRINGXP_002522085.18e-75(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-52AGAMOUS-like 62