PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa003006
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family WRKY
Protein Properties Length: 179aa    MW: 20921.8 Da    PI: 9.9811
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58675033PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.17.7e-33101159159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  Lsa003006 101 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHS 159
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-3486160IPR003657WRKY domain
SuperFamilySSF1182904.05E-2993160IPR003657WRKY domain
PROSITE profilePS5081129.58596161IPR003657WRKY domain
SMARTSM007744.0E-37101160IPR003657WRKY domain
PfamPF031061.2E-25102158IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MISLPNQNLK TLSPSYHLPQ HSKPEQHLTS HFGLPLQSSN ANYWAWGEVG EIISNKILGM  60
GRDDHHHHLG VSGMKMKKMK SRRKVREPRF CFKTMSDVDV LDDGYKWRKY GQKVVKNTQH  120
PRSYYRCTQD NCRVKKRVER LAEDPRMVIT TYEGRHAHSP SQNEEDSEAN TAKLCNFWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-2792158874Probable WRKY transcription factor 4
2lex_A4e-2792158874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023734625.11e-135probable WRKY transcription factor 13
SwissprotQ9SVB71e-57WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A2J6KDN91e-134A0A2J6KDN9_LACSA; Uncharacterized protein
STRINGcassava4.1_015466m7e-78(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.13e-50WRKY DNA-binding protein 13