PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa003093

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

NAC

Protein Properties

Length: 372aa MW: 42685.4 Da PI: 6.2774

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-5157	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158.8	2.2e-49	78	212	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelvv+yL++k ++ + + +i++vd+yk++Pw+Lp + +++ewyfF++rd+ky++g+r+nr+t +gyWkatg dk++++k Lsa003093 78 LPPGFRFHPTDEELVVHYLCRKSQTAEeicgvAPPPPIIADVDLYKHDPWELPDLALFGTNEWYFFTPRDRKYPNGSRPNRVTGNGYWKATGADKPIKRK 177 79*******************999977555333348***********65556899*********************************98 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ vg+kk Lvfy+g+ kg kt+W+mheyrl Lsa003093 178 sdPNTIVGIKKALVFYTGKGVKGIKTNWIMHEYRL 212 665667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.2E-59	73	239	IPR003441	NAC domain
PROSITE profile	PS51005	57.01	78	239	IPR003441	NAC domain
Pfam	PF02365	1.6E-27	79	212	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
XSNRAGIKPY HGILNSPHLQ ILDFDFCSYS FQHQSKRSLS DRSNQFNFGN ITYSHYKMRS 60 PSKSVTKRVR DAESELNLPP GFRFHPTDEE LVVHYLCRKS QTAEEICGVA PPPPIIADVD 120 LYKHDPWELP DLALFGTNEW YFFTPRDRKY PNGSRPNRVT GNGYWKATGA DKPIKRKSDP 180 NTIVGIKKAL VFYTGKGVKG IKTNWIMHEY RLPMLNTTPS KHTTISKLDD WVLCRLYNKK 240 NNPKVKIIAE DNNIHHIRDL HPTSPLDESQ SNNSDSTNSF ENSEGEFGGN FEGDVMFLSD 300 LPPESLTKVK GTSEESSIEE MENLMQRGDD GNEWLDSLSL EDLNHWLEAM PPNHDVDELP 360 IIYNPNQQYF FN

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

XSNRAGIKPY HGILNSPHLQ ILDFDFCSYS FQHQSKRSLS DRSNQFNFGN ITYSHYKMRS  60
PSKSVTKRVR DAESELNLPP GFRFHPTDEE LVVHYLCRKS QTAEEICGVA PPPPIIADVD  120
LYKHDPWELP DLALFGTNEW YFFTPRDRKY PNGSRPNRVT GNGYWKATGA DKPIKRKSDP  180
NTIVGIKKAL VFYTGKGVKG IKTNWIMHEY RLPMLNTTPS KHTTISKLDD WVLCRLYNKK  240
NNPKVKIIAE DNNIHHIRDL HPTSPLDESQ SNNSDSTNSF ENSEGEFGGN FEGDVMFLSD  300
LPPESLTKVK GTSEESSIEE MENLMQRGDD GNEWLDSLSL EDLNHWLEAM PPNHDVDELP  360
IIYNPNQQYF FN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-78	67	241	4	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in stress response. {ECO:0000250\|UniProtKB:Q7F2L3}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269\|PubMed:18813954, ECO:0000269\|PubMed:20632034}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023741764.1	0.0	NAC domain-containing protein 67-like
Swissprot	Q52QH4	3e-82	NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBL	A0A2J6MAU5	0.0	A0A2J6MAU5_LACSA; Uncharacterized protein
STRING	VIT_06s0004g00020.t01	5e-84	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08790.1	2e-75	NAC family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Taga Y, et al. Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4. Plant Signal Behav, 2009. 4(8): p. 740-2 [PMID:19820348] Xia N, et al. Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses. Mol. Biol. Rep., 2010. 37(8): p. 3703-12 [PMID:20213512] Takasaki H, et al. The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice. Mol. Genet. Genomics, 2010. 284(3): p. 173-83 [PMID:20632034] Nakayama A, et al. Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice. BMC Plant Biol., 2013. 13: p. 150 [PMID:24093634] Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice. Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60 [PMID:26766411]