PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa003280
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 194aa    MW: 21999.9 Da    PI: 6.7155
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58695950PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11121168455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++i+++++ L++++P +    +k  +Ka+iL + + Y++ Lq
  Lsa003280 121 NHSLAERARREKIKKRMQFLQDMVPGC----NKLTNKAAILDEIISYVQCLQ 168
                79************************9....666***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.27E-9115172No hitNo description
SuperFamilySSF474591.57E-16115180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.811117167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-18118178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-9121168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-8123173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MSEILQIFQH SPPPHVEFHG HEFNCSMDSG LPSPVITDHF QCSEFAGSPF TNFLSSSVDE  60
LSKVTTIIGH NQNLNKRKLE FDDDVEVDSQ KQRKPNTKTG KSKPKTDYIH VRARRGEATD  120
NHSLAERARR EKIKKRMQFL QDMVPGCNKL TNKAAILDEI ISYVQCLQME VELLTMQLAV  180
STTTPTLQDD NSLI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023754521.11e-144transcription factor BEE 2-like
TrEMBLA0A2J6LYT71e-143A0A2J6LYT7_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.21e-30bHLH family protein