PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa003301
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 339aa    MW: 38498 Da    PI: 7.1174
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58681951PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.43e-172471148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l+++++++G g+W++++++ g+ R++k+c++rw +yl
        Lsa003301 24 KGLWSPEEDDKLLKYITRFGVGCWSSVPKHAGLQRCGKSCRLRWINYL 71
                     678*******************************************97 PP
2Myb_DNA-binding48.81.6e-1577120146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg ++++E+el++++++ lG++ W+ Ia+ ++ gRt++++k++w++
        Lsa003301  77 RGMFSQQEEELILNLHQVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 120
                      788*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-261674IPR009057Homeodomain-like
PROSITE profilePS5129425.1671975IPR017930Myb domain
SuperFamilySSF466893.48E-2922118IPR009057Homeodomain-like
SMARTSM007173.6E-132373IPR001005SANT/Myb domain
PfamPF002491.6E-152471IPR001005SANT/Myb domain
CDDcd001671.41E-112771No hitNo description
Gene3DG3DSA:1.10.10.606.6E-2675127IPR009057Homeodomain-like
PROSITE profilePS5129419.6576126IPR017930Myb domain
SMARTSM007171.2E-1376124IPR001005SANT/Myb domain
PfamPF002494.2E-1477121IPR001005SANT/Myb domain
CDDcd001672.06E-1080119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
XNLKNNLESL MGRHSCCVKQ KLRKGLWSPE EDDKLLKYIT RFGVGCWSSV PKHAGLQRCG  60
KSCRLRWINY LRPDLKRGMF SQQEEELILN LHQVLGNRWA QIAAQLPGRT DNEIKNFWNS  120
CLKKKLIKQG IDPNTHKPIT DNEDVKDKKI EFFDKKSDFF PNSSSSMPMT AEFEQSFHIN  180
NGGLMSSMGT SSIRDTFLTK SVCDPLFLVE FQSGIDPISY NSNLLAQYQT TYETSLPNLA  240
NFDHRSTATA TATDFSDHSG SSTTGNSSNM NTTRSLSAGF EQMTFEGEMF QLNGVNVKSE  300
EGCVGQWQHH MHMHDVQVNN ASDFNIYQMG SYPDVFHQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30221265108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023739361.10.0transcription repressor MYB6-like
TrEMBLA0A2J6K3G80.0A0A2J6K3G8_LACSA; Uncharacterized protein
STRINGEOY208351e-112(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.31e-81myb domain protein 55