PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa003345

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

WRKY

Protein Properties

Length: 196aa MW: 22124.5 Da PI: 9.3929

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-19261	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.7	9.9e-33	118	176	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fpr+YYrCt++gC+vkk+v+r ++d +v++tYeg+H h+ Lsa003345 118 LDDGYRWRKYGQKAVKNNKFPRNYYRCTHQGCNVKKQVQRLSNDDGIVVTTYEGTHSHP 176 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.0E-34	103	176	IPR003657	WRKY domain
SuperFamily	SSF118290	6.54E-30	110	177	IPR003657	WRKY domain
PROSITE profile	PS50811	30.182	113	178	IPR003657	WRKY domain
SMART	SM00774	1.2E-38	118	177	IPR003657	WRKY domain
Pfam	PF03106	1.3E-26	119	176	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MNNNSDPVFS YSSSSPSSSA AAVNSSYLTL NMVNNNPADY NNYHEQMGLM EKDLQKYENS 60 EEMVGGHHVS PSSSSLAHGD GSQLIMAAAA GKTNIRKGEK KIRKPKHAFQ TRSQVDILDD 120 GYRWRKYGQK AVKNNKFPRN YYRCTHQGCN VKKQVQRLSN DDGIVVTTYE GTHSHPIEKS 180 TDNFEHILTQ MQIYSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-27	108	175	7	74	Probable WRKY transcription factor 4
2lex_A	1e-27	108	175	7	74	Probable WRKY transcription factor 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023770722.1	1e-147	probable WRKY transcription factor 75
TrEMBL	A0A2J6KYL7	1e-146	A0A2J6KYL7_LACSA; Uncharacterized protein
STRING	XP_004310100.1	5e-67	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	5e-57	WRKY DNA-binding protein 75