PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa003349
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 261aa    MW: 30107.6 Da    PI: 7.9654
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S32117858PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-142067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W+++Ed++l +++  +G g+W++++ + g+ R +k+c++rw +yl
        Lsa003349 20 RGLWSPDEDQKLRNYIVNHGIGCWTSVPIHAGLQRNGKSCRLRWINYL 67
                     788*******************************************97 PP
2Myb_DNA-binding48.12.7e-1573118148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +T +E+ ++  ++++lG++ W+  +++++ gRt++++k++w++++
        Lsa003349  73 RGTFTSQEENIIFSLHAMLGNK-WSQMSEHLP-GRTDNEIKNHWHSHM 118
                      899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-211470IPR009057Homeodomain-like
PROSITE profilePS5129415.8231567IPR017930Myb domain
SuperFamilySSF466898.8E-2818114IPR009057Homeodomain-like
SMARTSM007174.2E-101969IPR001005SANT/Myb domain
PfamPF002499.8E-132067IPR001005SANT/Myb domain
CDDcd001676.96E-92367No hitNo description
PROSITE profilePS5129424.4268122IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.0E-2571122IPR009057Homeodomain-like
SMARTSM007174.5E-1472120IPR001005SANT/Myb domain
PfamPF002491.5E-1373117IPR001005SANT/Myb domain
CDDcd001675.09E-975118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
FSLFPFIMRC RLLEKTKHKR GLWSPDEDQK LRNYIVNHGI GCWTSVPIHA GLQRNGKSCR  60
LRWINYLRPG LKRGTFTSQE ENIIFSLHAM LGNKWSQMSE HLPGRTDNEI KNHWHSHMKK  120
KVVNFENMKS HQQTPSSSSY TRTDSSLESS EADGCRNLPK ILFAEWLSLQ QFHKFDTSGM  180
EDIMSSYTFG SQKTVTSGAL LLNEGSGIQQ VGSTYGFVDS MDHLQLKYEH QYEESDFFDI  240
ISQLNISXNF NNSDVTLYSC N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-27201227108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023748089.10.0transcription factor LAF1-like
SwissprotQ9M0K43e-52LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A2J6JJF90.0A0A2J6JJF9_LACSA; Uncharacterized protein
STRINGXP_009763294.14e-74(Nicotiana sylvestris)
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]