PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa003369

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

HD-ZIP

Protein Properties

Length: 167aa MW: 19395.7 Da PI: 9.7325

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58675749	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-12016	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.4	5e-18	14	68	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++ ++t+eq++ Le+ F+ n++++ +++ +LA++lg++ rq+ +W+qN+Ra++++ Lsa003369 14 NKKRLTNEQVKLLETSFNFNNKLDSTRKSQLAQELGVPARQIAIWYQNKRARWRN 68 56789************************************************95 PP
2	HD-ZIP_I/II	101.8	6.1e-33	14	105	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+rl++eqvklLE+sF+ ++kL+++rK++la+eLg+ +rq+a+W+qn+RAR++++ lE+++++L++++++++++++rLe+eve+L+ el++ Lsa003369 14 NKKRLTNEQVKLLETSFNFNNKLDSTRKSQLAQELGVPARQIAIWYQNKRARWRNQSLETEHKTLQQRLERVSSDKNRLEREVERLKGELEK 105 79*************************************************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.2E-17	5	70	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.374	9	69	IPR001356	Homeobox domain
SMART	SM00389	2.2E-15	11	73	IPR001356	Homeobox domain
CDD	cd00086	1.80E-13	12	70	No hit	No description
Pfam	PF00046	2.9E-15	14	68	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.6E-18	19	69	IPR009057	Homeodomain-like
PRINTS	PR00031	2.2E-5	40	49	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	44	67	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.2E-5	49	65	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MDFSQPKKHP QKANKKRLTN EQVKLLETSF NFNNKLDSTR KSQLAQELGV PARQIAIWYQ 60 NKRARWRNQS LETEHKTLQQ RLERVSSDKN RLEREVERLK GELEKAKDLL VSSKSMNYAS 120 LPSFSSSCDD VGSSSLLGDH GDFYVCFDDH QFDHKSNGHD FFARTMS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	6	16	KKHPQKANKKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023746842.1	1e-122	homeobox-leucine zipper protein ATHB-52-like
TrEMBL	A0A2J6JM97	1e-121	A0A2J6JM97_LACSA; Uncharacterized protein
STRING	VIT_10s0003g00380.t01	6e-56	(Vitis vinifera)