PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa003371
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 184aa    MW: 20301.4 Da    PI: 4.3696
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58689091PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-54256PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.22e-051331711355
                HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                Rd++++    L+ ++P      ++ ++ +++L +Av+Y+ksL+
  Lsa003371 133 RDKMKKMVKSLKGIVPGV----NGGMNTVDVLDEAVKYLKSLK 171
                7****************8....799***************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.051120170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-5127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.57E-7128175No hitNo description
Gene3DG3DSA:4.10.280.102.1E-8131177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-8131177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MGSGYFPDRN LSSFFGQNVD FQPARDCPRN FIIFDRTDNQ SRIVYHPDTT TSTMPVRKDE  60
NAPGVMNEDL ADIDALLSLE DEEEEYEEGD DVSTGRTGGY DGSDTSDTCS SSRRNGGPGV  120
FLGYEVKDSE RKRDKMKKMV KSLKGIVPGV NGGMNTVDVL DEAVKYLKSL KVEAQKMGVG  180
DFQG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023742628.11e-133transcription factor bHLH144-like
TrEMBLA0A2J6MAK81e-132A0A2J6MAK8_LACSA; Uncharacterized protein
STRINGVIT_10s0003g02940.t012e-37(Vitis vinifera)
STRINGcassava4.1_015098m2e-37(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.29e-11bHLH family protein