PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa003400
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family HD-ZIP
Protein Properties Length: 285aa    MW: 32836.1 Da    PI: 6.0642
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58681541PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-12664PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.5e-1975126556
                SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                ++f++eq++ Le+lF++++++  +++ e+A++lgL  rqV +WFqNrRa++k
  Lsa003400  75 RRFSDEQIKSLESLFKMENKLEPRKKLEMARELGLHPRQVAIWFQNRRARWK 126
                48*************************************************9 PP
2HD-ZIP_I/II121.93.3e-3974164393
  HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                   rr+s+eq+k+LE+ F++e+kLep++K e+areLgl+prqva+WFqnrRAR+k+kq+E+dy++Lk+ ydal+++ e+L+ke+++L e+l++
    Lsa003400  74 SRRFSDEQIKSLESLFKMENKLEPRKKLEMARELGLHPRQVAIWFQNRRARWKSKQVEQDYTSLKADYDALSHRFESLKKEKHALLEQLRD 164
                  59************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.7E-1671132IPR001356Homeobox domain
SuperFamilySSF466895.56E-1874138IPR009057Homeodomain-like
CDDcd000861.09E-1475129No hitNo description
Gene3DG3DSA:1.10.10.603.5E-1975135IPR009057Homeodomain-like
PfamPF000461.2E-1675126IPR001356Homeobox domain
PROSITE profilePS5007116.34276128IPR001356Homeobox domain
PRINTSPR000311.2E-599108IPR000047Helix-turn-helix motif
PROSITE patternPS000270103126IPR017970Homeobox, conserved site
PRINTSPR000311.2E-5108124IPR000047Helix-turn-helix motif
PfamPF021831.2E-12128167IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
XLKHDSTRYL DYIILNNSFI HLLKNKDFMI LKHVRMLGGA SGSETNIDHE VFKPTAGAQI  60
RKKSKSKNII NNSSRRFSDE QIKSLESLFK MENKLEPRKK LEMARELGLH PRQVAIWFQN  120
RRARWKSKQV EQDYTSLKAD YDALSHRFES LKKEKHALLE QLRDLCTRLK EPHEGSSSKD  180
LDSGSENGDT NLELNNGNYS SGFSGALDMA IYSDEDDPRR KPNIIISSRK EESENVNVNQ  240
LISRHDDDDD DDADADDNEK ASNYDLGSLF DQSCSNWWDV WSSNS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120128RRARWKSKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023740807.10.0homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A1B0T6U97e-87A0A1B0T6U9_CHRMO; HD-ZIP protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.17e-37homeobox 7