PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa003438

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

BES1

Protein Properties

Length: 693aa MW: 77973 Da PI: 5.2662

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S32119111	PU_unref	Unigene	View CDS
PUT-187a-Lactuca_sativa-13409	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	137.7	1.2e-42	73	209	1	134
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq...ss 97 gg++r ++ +E+E++k+RER+RRai+aki+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++ s+ + a+ + +s++ p + q ++ Lsa003438 73 GGGRRCRPIEEKERTKLRERQRRAITAKILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRSQGVRPAAGVSTSSTSLPLQQNQatsLR 172 689999****************************************************************777766666666666665444444431255 PP DUF822 98 lkssalaspvesysaspksssfpspssldsislasaa 134 ssa + +++ ++++k +ps++ s s +s++ Lsa003438 173 GISSACPIEMDNEACQMKGLFVPSSAYDVSSSGRSQS 209 6677777778888888888888877654444444433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	5.7E-37	74	199	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	3.44E-172	249	688	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	1.8E-193	252	688	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	6.7E-105	258	679	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.6E-66	289	303	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.6E-66	310	328	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.6E-66	332	353	IPR001554	Glycoside hydrolase, family 14
PROSITE pattern	PS00506	0	336	344	IPR018238	Glycoside hydrolase, family 14, conserved site
PRINTS	PR00750	1.6E-66	425	447	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.6E-66	498	517	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.6E-66	532	548	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.6E-66	549	560	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.6E-66	567	590	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.6E-66	608	630	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 693 aa Download sequence Send to blast
MATEMQRFGT SEEEDEEMGL DVKEEGENDE DDDDKNSTPP TMVGVDGGLM TSSRSNNRFQ 60 HQQQFQDQMT PQGGGRRCRP IEEKERTKLR ERQRRAITAK ILAGLRRHGN YNLRVRADIN 120 DVIAALAREA GWVVLPDGTT FPSRSQGVRP AAGVSTSSTS LPLQQNQATS LRGISSACPI 180 EMDNEACQMK GLFVPSSAYD VSSSGRSQSS HMLGVEVDGQ DDPLIGVSVD TVAGRQVVDM 240 PSKLQERDFA GTPYVPVYVL LPLGAVNMKC EVVDPDGLLN QLRVLKSMNV DGVMVDCWWG 300 IVEAHVPQEY NWKGYKRLFQ MVRELKLKLQ VVMSFHECGG NVGDDVCIPL PHWVAEIGRS 360 NPDIFFTDRS GRRNPECLSL GIDKERVLRG RTASEVYFDY MRSFRVEFDE FFVDGVISMI 420 EIGLGPCGEL RYPSNPVKHG WRYPGVGEFQ CYDRYMLKSL TKAAETRGHS FWGRGPENAG 480 SYNSRPHETG FFCNAGDYDG YYGRFFLDWY SQLLINHADR LLSLAKFAFE GTFTTAKLSG 540 IHWWYKTSSH AAELTAGFYN PSNRDGYAPI MEVLKKHGVA LNFTLAHMNI NMDMDMDSSE 600 ALEDPDALAW QVMNAAWDSC IAMTSENPLP CVDKVSYNYI LEKAKPMNDP DGRHYSAFTY 660 LRLGQLLMDP HNIMEFERFV KRMHGEAVLE IHA

Sequence ? help Back to Top

Protein Sequence Length: 693 aa Download sequence Send to blast

MATEMQRFGT SEEEDEEMGL DVKEEGENDE DDDDKNSTPP TMVGVDGGLM TSSRSNNRFQ  60
HQQQFQDQMT PQGGGRRCRP IEEKERTKLR ERQRRAITAK ILAGLRRHGN YNLRVRADIN  120
DVIAALAREA GWVVLPDGTT FPSRSQGVRP AAGVSTSSTS LPLQQNQATS LRGISSACPI  180
EMDNEACQMK GLFVPSSAYD VSSSGRSQSS HMLGVEVDGQ DDPLIGVSVD TVAGRQVVDM  240
PSKLQERDFA GTPYVPVYVL LPLGAVNMKC EVVDPDGLLN QLRVLKSMNV DGVMVDCWWG  300
IVEAHVPQEY NWKGYKRLFQ MVRELKLKLQ VVMSFHECGG NVGDDVCIPL PHWVAEIGRS  360
NPDIFFTDRS GRRNPECLSL GIDKERVLRG RTASEVYFDY MRSFRVEFDE FFVDGVISMI  420
EIGLGPCGEL RYPSNPVKHG WRYPGVGEFQ CYDRYMLKSL TKAAETRGHS FWGRGPENAG  480
SYNSRPHETG FFCNAGDYDG YYGRFFLDWY SQLLINHADR LLSLAKFAFE GTFTTAKLSG  540
IHWWYKTSSH AAELTAGFYN PSNRDGYAPI MEVLKKHGVA LNFTLAHMNI NMDMDMDSSE  600
ALEDPDALAW QVMNAAWDSC IAMTSENPLP CVDKVSYNYI LEKAKPMNDP DGRHYSAFTY  660
LRLGQLLMDP HNIMEFERFV KRMHGEAVLE IHA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ukp_A	1e-144	254	686	11	444	Beta-amylase
1ukp_B	1e-144	254	686	11	444	Beta-amylase
1ukp_C	1e-144	254	686	11	444	Beta-amylase
1ukp_D	1e-144	254	686	11	444	Beta-amylase
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023754274.1	0.0	beta-amylase 7 isoform X2
Swissprot	O80831	0.0	BAM7_ARATH; Beta-amylase 7
TrEMBL	A0A2J6LZE2	0.0	A0A2J6LZE2_LACSA; Beta-amylase
STRING	VIT_15s0046g02640.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	0.0	beta-amylase 7

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]