PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa003531
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family NF-YB
Protein Properties Length: 161aa    MW: 17849.9 Da    PI: 4.7741
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58668740PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB178.55.9e-5621118198
      NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegekk 98 
                vreqdrflPian+srimkk lPan+k +kdaketvqecvsefisf+tseasdkc +ekrktingddllwa+atlGfedy+eplk+yl +yre+eg++k
  Lsa003531  21 VREQDRFLPIANISRIMKKGLPANGKTAKDAKETVQECVSEFISFITSEASDKCLKEKRKTINGDDLLWAMATLGFEDYIEPLKAYLIRYREIEGDTK 118
                69*********************************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.1E-5218137IPR009072Histone-fold
SuperFamilySSF471131.46E-3924149IPR009072Histone-fold
PfamPF008084.2E-262791IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006157.5E-205573No hitNo description
PROSITE patternPS0068505874IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006157.5E-207492No hitNo description
PRINTSPR006157.5E-2093111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MAEGPSSPGE SGDLSPRSSN VREQDRFLPI ANISRIMKKG LPANGKTAKD AKETVQECVS  60
EFISFITSEA SDKCLKEKRK TINGDDLLWA MATLGFEDYI EPLKAYLIRY REIEGDTKGS  120
GRKEGVQLQP EHDEGFYSQG LSYGDSQQQG QHLMVPMQGT E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A4e-4520112193NF-YB
4awl_B3e-4520112294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A3e-4520112294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023744914.11e-117nuclear transcription factor Y subunit B-1-like
SwissprotQ8VYK42e-74NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A2J6JRC71e-101A0A2J6JRC7_LACSA; Uncharacterized protein
STRINGXP_010244998.11e-82(Nelumbo nucifera)
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]