PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa003534
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 272aa    MW: 30242.4 Da    PI: 4.7972
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58676762PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-101982381055
                HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                ++RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  Lsa003534 198 KKRRERINERLRILQSLVPNG-----TKVDISTMLEEAVQYVKFLQ 238
                9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-14187252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.269188237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-12192247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-11194243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.23E-12197242No hitNo description
PfamPF000106.2E-8198238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MESVSTLLEG ERNYFSGTYV SEEADFMAQL LGNFSTKSPK TSTFEDSSSS SSAFWSQSHH  60
ESTMKDDYEA SISISDNANT NSLLFPTSSG ESYLSISSSG GNNKRGISVI PFFSKMEGEE  120
ATEFDNMTPS SRKRSYSFDD VQMGWKKTKF TSMNDSDDDS NRLQDLSPRP QGVPMANSSG  180
KKRASNGSAT DSQSVYAKKR RERINERLRI LQSLVPNGTK VDISTMLEEA VQYVKFLQLQ  240
IKLLSSDDLW MYAPLAYNGM DIGLDITLPS PR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180200KKRASNGSATDSQSVYAKKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023755773.10.0transcription factor bHLH84-like
TrEMBLA0A2J6LWB90.0A0A2J6LWB9_LACSA; Uncharacterized protein
STRINGVIT_03s0091g00730.t013e-64(Vitis vinifera)