PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa003599
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 318aa    MW: 35831.7 Da    PI: 8.0183
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58686238PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-38671PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.4e-09144191455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++i +++  L+ ++P +    +k   Ka +L + ++Y++sLq
  Lsa003599 144 SHSLAERVRREKISERMKLLQAIVPGC----DKVTGKALMLDEIINYVQSLQ 191
                8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.11E-9138195No hitNo description
SuperFamilySSF474591.7E-16138207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-16140205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.11140190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-6144191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-9146196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MAAFSYHQQH QSFVLDQTVF FPFPTTTTTT TTTSFSQFHE QHDQVYVANK LQSPDSSMSI  60
VLDDQKVSSV NDQLFAKKRK DKQICSLHRA QSKDTSTKLK KQKKSNDYQE EKKKKIISKQ  120
SSCEEEGAIG YIHVRARRGQ ATDSHSLAER VRREKISERM KLLQAIVPGC DKVTGKALML  180
DEIINYVQSL QNQVEFLSMK LASVNPMLYD FGVDMEAFML KPDENMSSMV LPIMPMPSVQ  240
QCSTHGGASP ATFAPATDNY PHLPLLIDAS ASPNSLLFQQ SQMPNILSQG NGQHLWEADE  300
QRLKLDTRFA INSNLSSF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023747273.10.0transcription factor bHLH137-like isoform X1
RefseqXP_023747274.10.0transcription factor bHLH137-like isoform X1
TrEMBLA0A2J6JLB10.0A0A2J6JLB1_LACSA; Uncharacterized protein
STRINGVIT_17s0000g00430.t019e-80(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.23e-50bHLH family protein