PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa003627

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

NAC

Protein Properties

Length: 243aa MW: 27907.8 Da PI: 5.5871

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58675387	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	115.3	6.3e-36	52	171	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrF Ptdeelvv++L++k++ + + ++i+++d+y ++PwdL+ k+ e k+wy++s+r +nr+t++gyWka d++++s+ +++ Lsa003627 52 LPPGFRFCPTDEELVVHFLQRKASLLPYHP-DIIPDLDLYPYDPWDLDGKAMVEGKKWYYYSRRT--------QNRITTNGYWKAWDCDEQIISSsSSKR 142 79***********************998.89**********977777899**984........589999********999867788 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kk vf+ g+ap+g+kt+W+m+e+rl Lsa003627 143 VGVKKYYVFHIGEAPEGVKTNWIMQEFRL 171 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.54E-47	48	207	IPR003441	NAC domain
PROSITE profile	PS51005	44.587	52	209	IPR003441	NAC domain
Pfam	PF02365	6.1E-21	53	171	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
XSRLHYSIFQ PHNIINNFNS LILISLILNN PSTYPLIGLR FSLMGDSNNV NLPPGFRFCP 60 TDEELVVHFL QRKASLLPYH PDIIPDLDLY PYDPWDLDGK AMVEGKKWYY YSRRTQNRIT 120 TNGYWKAWDC DEQIISSSSS KRVGVKKYYV FHIGEAPEGV KTNWIMQEFR LSDASNSSGS 180 SSSSSGRSKR KGHSKVDSSK WVICRVFDHS YDSDDDNENG TELSCLDEVF LSLDDFDDIS 240 YPN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-41	48	207	13	163	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-41	48	207	13	163	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-41	48	207	13	163	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-41	48	207	13	163	NO APICAL MERISTEM PROTEIN
3swm_A	6e-41	48	210	16	169	NAC domain-containing protein 19
3swm_B	6e-41	48	210	16	169	NAC domain-containing protein 19
3swm_C	6e-41	48	210	16	169	NAC domain-containing protein 19
3swm_D	6e-41	48	210	16	169	NAC domain-containing protein 19
3swp_A	6e-41	48	210	16	169	NAC domain-containing protein 19
3swp_B	6e-41	48	210	16	169	NAC domain-containing protein 19
3swp_C	6e-41	48	210	16	169	NAC domain-containing protein 19
3swp_D	6e-41	48	210	16	169	NAC domain-containing protein 19
4dul_A	5e-41	48	207	13	163	NAC domain-containing protein 19
4dul_B	5e-41	48	207	13	163	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023736898.1	1e-147	NAC domain-containing protein 104-like
Swissprot	Q8GWK6	2e-76	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A2J6K8U9	1e-146	A0A2J6K8U9_LACSA; Uncharacterized protein
STRING	GLYMA08G08010.1	1e-90	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	2e-54	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]