PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa003643

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Protein Properties

Length: 234aa MW: 26904.7 Da PI: 9.0113

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58683201	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-37248	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.3	1.6e-14	132	220	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 f+k +++s+++ +l lp +f+++ ++++ t+tl de+g+++ + ++g+ l++GW++F ++L +gD +vF++++ + f +v ++ Lsa003643 132 FVKPMLQSHTTGGFWLGLPTHFCRKSL--PRTDCTVTLIDEEGEEFPTVY--LAHKGG--LSGGWRGFSIHHQLVDGDALVFHRIQPTVF--KVYII 220 89*******************8884..345669***********..777777..9********************8876666..66665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	4.32E-23	126	222	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.6E-18	126	221	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.75E-24	130	221	No hit	No description
PROSITE profile	PS50863	10.588	132	223	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.7E-12	132	221	IPR003340	B3 DNA binding domain
SMART	SM01019	2.0E-18	132	223	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MVVSKKNYED LRKQRLEENK KRMEELHLPQ LTQALKTAHS PTPSPMKRTK PRVIGTEMVE 60 VRRSSRVAHL PAPVYKEIVV YERVELPRSG RRYSYSRRDL GNRVYASDEA RDYAINKAEE 120 LEAKLEGGHP SFVKPMLQSH TTGGFWLGLP THFCRKSLPR TDCTVTLIDE EGEEFPTVYL 180 AHKGGLSGGW RGFSIHHQLV DGDALVFHRI QPTVFKVYII RCKDYDEEGE NLEA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023728492.1	1e-175	B3 domain-containing protein Os06g0194400-like
Swissprot	Q69V36	2e-77	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A2J6KSC8	1e-174	A0A2J6KSC8_LACSA; Uncharacterized protein
STRING	XP_009783454.1	1e-100	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	3e-73	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]