PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa003649

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

CO-like

Protein Properties

Length: 363aa MW: 40377.9 Da PI: 5.7395

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-2856385	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.6	7.9e-06	4	35	4	35
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHk 35 + C+ ++ + lfC+ ++ +lC C + H Lsa003649 4 TLCDSCKTTSAALFCRADSAFLCIPCDGKVHA 35 68****99**************998885 PP
2	zf-B_box	28	4.7e-09	46	88	3	39
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 ++C+ +e+ ++++ C+ + lC +C e+H+ H++ Lsa003649 46 VWMCDVCERAPASFTCKADAATLCVTCDREIHSAnplarrHER 88 689*****************************65777777876 PP
3	CCT	70.1	5.6e-24	297	340	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRYkeKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++ Lsa003649 297 REAKVLRYKEKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRT 340 9*****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.281	1	48	IPR000315	B-box-type zinc finger
SMART	SM00336	1.4E-11	1	48	IPR000315	B-box-type zinc finger
CDD	cd00021	9.86E-7	4	48	No hit	No description
PROSITE profile	PS50119	10.694	44	91	IPR000315	B-box-type zinc finger
Pfam	PF00643	4.2E-7	46	90	IPR000315	B-box-type zinc finger
CDD	cd00021	1.45E-8	47	91	No hit	No description
SMART	SM00336	1.9E-10	49	91	IPR000315	B-box-type zinc finger
Pfam	PF06203	7.9E-18	297	339	IPR010402	CCT domain
PROSITE profile	PS51017	16.618	297	339	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MAATLCDSCK TTSAALFCRA DSAFLCIPCD GKVHAANKLA SRHARVWMCD VCERAPASFT 60 CKADAATLCV TCDREIHSAN PLARRHERFP VVPFYDPATA VSKVGGGGDN DNDNNDHHFL 120 LDFDVNVAGT EAEEAEAASW LIPDPNINKI VDGSEDDNKS EYLFNEIDPY LDIDLKTPDQ 180 KANQIIRRYN SPTDGVVPVQ NKIENRHYQM PPHAHASSPD VVEGLPAYDV DYTGSKPFMY 240 NFTSQSVSQS VSSSSLEIEV GVVPDHNANA TMADVSNNHH HPSLPEVYPT PVSGFDREAK 300 VLRYKEKRKN RRFEKTIRYA SRKAYAETRP RIKGRFAKRT EIDLEVEDTF ISPDSSYGIV 360 PSY

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MAATLCDSCK TTSAALFCRA DSAFLCIPCD GKVHAANKLA SRHARVWMCD VCERAPASFT  60
CKADAATLCV TCDREIHSAN PLARRHERFP VVPFYDPATA VSKVGGGGDN DNDNNDHHFL  120
LDFDVNVAGT EAEEAEAASW LIPDPNINKI VDGSEDDNKS EYLFNEIDPY LDIDLKTPDQ  180
KANQIIRRYN SPTDGVVPVQ NKIENRHYQM PPHAHASSPD VVEGLPAYDV DYTGSKPFMY  240
NFTSQSVSQS VSSSSLEIEV GVVPDHNANA TMADVSNNHH HPSLPEVYPT PVSGFDREAK  300
VLRYKEKRKN RRFEKTIRYA SRKAYAETRP RIKGRFAKRT EIDLEVEDTF ISPDSSYGIV  360
PSY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023749268.1	0.0	zinc finger protein CONSTANS-LIKE 4-like
Swissprot	Q940T9	3e-95	COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBL	A0A2J6JGS9	0.0	A0A2J6JGS9_LACSA; Uncharacterized protein
STRING	XP_009758697.1	1e-137	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24930.1	9e-94	CONSTANS-like 4