PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa003672
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family WRKY
Protein Properties Length: 409aa    MW: 45028.3 Da    PI: 8.451
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58687060PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.18.6e-34127183259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkk+vers  +++v+ei+Y+g+Hnh+
  Lsa003672 127 DDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKQVERSV-EGQVTEIIYKGQHNHQ 183
                8****************************************.***************8 PP
2WRKY106.21.6e-33290348159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+a+dpk+v++tYeg+H+h+
  Lsa003672 290 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSQGCNVRKHVERAASDPKAVITTYEGKHTHD 348
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-29121185IPR003657WRKY domain
PROSITE profilePS5081123.973121185IPR003657WRKY domain
SuperFamilySSF1182901.05E-26124185IPR003657WRKY domain
SMARTSM007749.5E-38126184IPR003657WRKY domain
PfamPF031065.5E-26127183IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.9E-38275350IPR003657WRKY domain
SuperFamilySSF1182904.97E-30282350IPR003657WRKY domain
PROSITE profilePS5081138.434285350IPR003657WRKY domain
SMARTSM007742.0E-40290349IPR003657WRKY domain
PfamPF031061.6E-26291348IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
GCSGGGGGGG NVDFQFSNNG RPSSLVVTQP SMFTIPPGLS PATLLDSPGF FPQTQASLGM  60
SHQQALAQVT AQASSLPQIH SFTSTAATYH RLPPAKPDHN TAKDSSDFSN SDNRYYPSSI  120
AVDKPADDGY NWRKYGQKQV KGSEYPRSYY KCTHPNCPVK KQVERSVEGQ VTEIIYKGQH  180
NHQPPQSKRG KDSSNGTSSV NEHKFEGQIG NFNHSLMKDQ ESSQATYEHS GSSDSEEVGN  240
DVSRVDERHE DEPQQKRRNI EARGVDPVSS HRGVTEPRII VQTTSEVDLL DDGYRWRKYG  300
QKVVKGNPHP RSYYKCTSQG CNVRKHVERA ASDPKAVITT YEGKHTHDVP AAKNSSHNIA  360
ANTAAAAQLQ PPNHGGHSLI RRQDYPNHHQ QQPQPPPSGL LQFKEEQIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-40127351878Probable WRKY transcription factor 4
2lex_A2e-40127351878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023757815.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ701e-142WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2J6LRK10.0A0A2J6LRK1_LACSA; Uncharacterized protein
STRINGXP_009794188.11e-165(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-142WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]