PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa003681

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

BBR-BPC

Protein Properties

Length: 314aa MW: 35058.4 Da PI: 9.9602

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58693432	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-32551	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	328.9	1.4e-100	1	314	1	301
GAGA_bind 1 mdddgsre..rnkg.yye................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkl 81 mdd g+re ++ yy+ ++++l ++ ++m +++erd++i+er+ alsekk+a+ erdma +qrd+a+a+rn+a+ erdn++ Lsa003681 1 MDDGGHREkgGHRVdYYKgvhpqwnmmpqqyqvkDQNALL--MNRKIMHIVSERDTAIEERDRALSEKKSALEERDMAIQQRDAAIADRNDAIRERDNAI 98 8888888866455558889999999998655443223444..899***************************************************** PP GAGA_bind 82 lalllvenslasalpvgvqvlsgtksidslqqlse..pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvk 179 +al ++e++++++l +++++ t +++++ s ++ +++ +e+ ++ ++ + + +++ke+k+ ++ ++ ++ kk+kk +e+ +++v+ Lsa003681 99 AALRFQETTMNNHL---QRASKRTATTHHHPPPSSyrHDQNPNITEAFPITIVPSEATAAKSKSVKERKSGGNGGSGGGGGGSRLKKQKKVGEDLNRNVT 195 *****99888...45555555555555423211222333333344444444444444555555555555666666777788888888888888887 PP GAGA_bind 180 kesaderskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGyd 278 +++ skae++ ++l ++++++Dest+P+P+CsCtG+ rqCYkWG+GGWqS+CCtttiSvyPLP+++++r++R++grKmS+ +f++lL++Laa+G+d Lsa003681 196 TDG----SKAEWDAQELgLMDQINFDESTMPIPICSCTGVGRQCYKWGSGGWQSSCCTTTISVYPLPQMPNKRHSRMGGRKMSGTVFTRLLSRLAAQGHD 291 777....89****4469*************************************************************************** PP GAGA_bind 279 lsnpvDLkdhWAkHGtnkfvtir 301 ls pvDLk++WAkHGtn+++ti+ Lsa003681 292 LSAPVDLKNYWAKHGTNRYITIK 314 ********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	1.4E-94	1	314	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	3.3E-130	1	314	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MDDGGHREKG GHRVDYYKGV HPQWNMMPQQ YQVKDQNALL MNRKIMHIVS ERDTAIEERD 60 RALSEKKSAL EERDMAIQQR DAAIADRNDA IRERDNAIAA LRFQETTMNN HLQRASKRTA 120 TTHHHPPPSS YRHDQNPNIT EAFPITIVPS EATAAKSKSV KERKSGGNGG SGGGGGGSRL 180 KKQKKVGEDL NRNVTTDGSK AEWDAQELGL MDQINFDEST MPIPICSCTG VGRQCYKWGS 240 GGWQSSCCTT TISVYPLPQM PNKRHSRMGG RKMSGTVFTR LLSRLAAQGH DLSAPVDLKN 300 YWAKHGTNRY ITIK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023755249.1	0.0	protein BASIC PENTACYSTEINE4-like
Refseq	XP_023755250.1	0.0	protein BASIC PENTACYSTEINE4-like
Refseq	XP_023755251.1	0.0	protein BASIC PENTACYSTEINE4-like
Refseq	XP_023755252.1	0.0	protein BASIC PENTACYSTEINE4-like
Refseq	XP_023755253.1	0.0	protein BASIC PENTACYSTEINE4-like
Swissprot	Q8S8C6	1e-114	BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBL	A0A2J6LX66	0.0	A0A2J6LX66_LACSA; Uncharacterized protein
STRING	XP_009804621.1	1e-135	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21240.2	1e-105	basic pentacysteine 4