PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa003726

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Trihelix

Protein Properties

Length: 390aa MW: 43305.4 Da PI: 6.1427

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58686984	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.6	5.9e-27	87	181	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rWt+qe l+Li+++r e+r+rrg+ + +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e++ ++e++s + + ++l+ Lsa003726 87 RWTRQELLVLIQGKRVAENRVRRGRsavlafgsaQVEPKWSSVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESQIKDEAESFWLMRNDLR 181 8********************866777777779*******************************************999999999888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.0E-11	87	176	No hit	No description
PROSITE profile	PS50090	6.562	87	153	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.4E-5	87	152	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
KNKDAIDIGM XIKDPSLLQT PNGRTPPTIT IYSFITKTPL PGNRLPVKSR ALLHFMALER 60 LTLAPVVLDT GTGNGGEDLN KAPRLPRWTR QELLVLIQGK RVAENRVRRG RSAVLAFGSA 120 QVEPKWSSVS SYCKRHGVNR GPVQCRKRWS NLAGDFKKIK EWESQIKDEA ESFWLMRNDL 180 RRERKLPGFF DREVYDILDG GGPSSAEAEA EGDKSLVLSL APSAAETENE VLFDSGRTAA 240 AVDDGLFSDE VIGSPEKAPT PISATQYEPF SQEVPEHDHH HPVPTAAADK KSSPINPDEA 300 ADGTAHQGSS RKRKRPAIDA DEDEDEEEEM SLQKQLIEAM ERNGRLLSSQ LEIQNTNSQL 360 DRDQRKDHAN TLFAVLNKLA DAMVRIADKL

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

KNKDAIDIGM XIKDPSLLQT PNGRTPPTIT IYSFITKTPL PGNRLPVKSR ALLHFMALER  60
LTLAPVVLDT GTGNGGEDLN KAPRLPRWTR QELLVLIQGK RVAENRVRRG RSAVLAFGSA  120
QVEPKWSSVS SYCKRHGVNR GPVQCRKRWS NLAGDFKKIK EWESQIKDEA ESFWLMRNDL  180
RRERKLPGFF DREVYDILDG GGPSSAEAEA EGDKSLVLSL APSAAETENE VLFDSGRTAA  240
AVDDGLFSDE VIGSPEKAPT PISATQYEPF SQEVPEHDHH HPVPTAAADK KSSPINPDEA  300
ADGTAHQGSS RKRKRPAIDA DEDEDEEEEM SLQKQLIEAM ERNGRLLSSQ LEIQNTNSQL  360
DRDQRKDHAN TLFAVLNKLA DAMVRIADKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023771802.1	0.0	trihelix transcription factor ASR3
Swissprot	Q8VZ20	1e-108	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A2J6KW47	0.0	A0A2J6KW47_LACSA; Uncharacterized protein
STRING	VIT_01s0150g00050.t01	1e-131	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-109	Trihelix family protein

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]