PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa003749

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

TALE

Protein Properties

Length: 745aa MW: 81030.5 Da PI: 6.4841

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-13045	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.4	5.9e-09	508	545	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ L++++gL+ +qV++WF N R + Lsa003749 508 FEHflHPYPSDADKHLLSRQTGLSRNQVSNWFINARVR 545 664459******************************88 PP
2	BELL	121	5.1e-39	369	440	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 er e+q++k+kL s+l+eVd+rY++y+eq+q+v++sF+ v+g g+a pYt+lA+ka+SrhFrcLkdaia q+ Lsa003749 369 ERIEHQRRKVKLSSMLDEVDRRYNHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAIAAQL 440 789******************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.1E-79	295	438	IPR006563	POX domain
Pfam	PF07526	7.2E-52	300	437	IPR006563	POX domain
PROSITE profile	PS50071	12.212	486	549	IPR001356	Homeobox domain
CDD	cd00086	2.60E-12	489	550	No hit	No description
SMART	SM00389	3.6E-9	489	553	IPR001356	Homeobox domain
SuperFamily	SSF46689	9.84E-17	491	556	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.7E-28	492	555	IPR009057	Homeodomain-like
Pfam	PF05920	1.0E-17	506	545	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 745 aa Download sequence Send to blast
MEVVKSKALE EKVLLPFDSM SQDYIFNFSH GFERSSAQDQ IRRDKLRVQG FEPPPPSLVG 60 LEGVDEGHGG LPAVYESGAG MLSEMFNLPT GGFNSASELL VNQINYQHHH RNQRPTTARD 120 WYGNSAQAMQ LFLTNPSHES PSSESPSHHH HNHHNPSSSS TLHMLMPNNV PSANSTLHHQ 180 QSFGSSTGAG QGHFGPSTQF TWVPPGGTSH EGEGVGGVEG LSLSLSSTLQ HLEAAKVEDL 240 RIGDDSAAAG MLYFNQVGGG GGGGDPYRNL HIQGGGGVMS ETHHPIHIGF GSSSLGVVKV 300 LRNSRYVKAA QDLLEEFCSV GRGQFKKNKS GSKHNNPNQN PTSSGGGGGV GGGASSSSSK 360 DLPPLSSTER IEHQRRKVKL SSMLDEVDRR YNHYCEQMQM VVNSFDLVMG FGAAVPYTAL 420 AQKAMSRHFR CLKDAIAAQL KYSCEVLGEK DAGSSGVTKG ETPRLKLLEQ SLRQQRAFHQ 480 MGMMEQEAWR PQRGLPERSV NILRAWLFEH FLHPYPSDAD KHLLSRQTGL SRNQVSNWFI 540 NARVRLWKPM VEEMYQQESK EEGEHHQDDD DDDQDEENKL ETSINYNNQN KNGPPSSSSS 600 SALAQTPMPP PPPPPSTYTT TSTATPAKRS EINDPENDPS VLAINTQNCF SENQATAMSY 660 SYTPINITST TTGNTSTTPQ SFPATLDADT CRRGSMPAGD DGSEIGSTLI RFGTTAGDVS 720 LTLGLRHAGN LPEKNSFSVR DFGGC

Sequence ? help Back to Top

Protein Sequence Length: 745 aa Download sequence Send to blast

MEVVKSKALE EKVLLPFDSM SQDYIFNFSH GFERSSAQDQ IRRDKLRVQG FEPPPPSLVG  60
LEGVDEGHGG LPAVYESGAG MLSEMFNLPT GGFNSASELL VNQINYQHHH RNQRPTTARD  120
WYGNSAQAMQ LFLTNPSHES PSSESPSHHH HNHHNPSSSS TLHMLMPNNV PSANSTLHHQ  180
QSFGSSTGAG QGHFGPSTQF TWVPPGGTSH EGEGVGGVEG LSLSLSSTLQ HLEAAKVEDL  240
RIGDDSAAAG MLYFNQVGGG GGGGDPYRNL HIQGGGGVMS ETHHPIHIGF GSSSLGVVKV  300
LRNSRYVKAA QDLLEEFCSV GRGQFKKNKS GSKHNNPNQN PTSSGGGGGV GGGASSSSSK  360
DLPPLSSTER IEHQRRKVKL SSMLDEVDRR YNHYCEQMQM VVNSFDLVMG FGAAVPYTAL  420
AQKAMSRHFR CLKDAIAAQL KYSCEVLGEK DAGSSGVTKG ETPRLKLLEQ SLRQQRAFHQ  480
MGMMEQEAWR PQRGLPERSV NILRAWLFEH FLHPYPSDAD KHLLSRQTGL SRNQVSNWFI  540
NARVRLWKPM VEEMYQQESK EEGEHHQDDD DDDQDEENKL ETSINYNNQN KNGPPSSSSS  600
SALAQTPMPP PPPPPSTYTT TSTATPAKRS EINDPENDPS VLAINTQNCF SENQATAMSY  660
SYTPINITST TTGNTSTTPQ SFPATLDADT CRRGSMPAGD DGSEIGSTLI RFGTTAGDVS  720
LTLGLRHAGN LPEKNSFSVR DFGGC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	1e-16	495	552	1	58	Homeobox protein Meis1
4xrs_B	1e-16	495	552	1	58	Homeobox protein Meis1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023730122.1	0.0	BEL1-like homeodomain protein 4
Refseq	XP_023730123.1	0.0	BEL1-like homeodomain protein 4
Refseq	XP_023730124.1	0.0	BEL1-like homeodomain protein 4
Swissprot	Q9SW80	1e-158	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A2J6KNP1	0.0	A0A2J6KNP1_LACSA; Uncharacterized protein
STRING	VIT_04s0023g01020.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-142	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]