PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa003784
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family CAMTA
Protein Properties Length: 861aa    MW: 98250.8 Da    PI: 7.572
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58696859PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1174.21.8e-54201363118
       CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101
                +e ++rwl++ ei++iL+n++k++l  +++  p+ gsl+L++rk++ryfrkDG+ w+kkkdgk v+E+hekLK g+v+vl+cyYah+e+n++fqrr+yw+
  Lsa003784  20 QEaQHRWLRPAEICEILTNYHKFQLRPSPPVMPPAGSLFLFDRKVIRYFRKDGHRWRKKKDGKIVKEAHEKLKAGSVDVLHCYYAHGEDNENFQRRSYWM 119
                5669************************************************************************************************ PP

       CG-1 102 Leeelekivlvhylevk 118
                L++++e+ivlvhy+evk
  Lsa003784 120 LDKQYENIVLVHYREVK 136
                **************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143778.65715141IPR005559CG-1 DNA-binding domain
SMARTSM010761.3E-7418136IPR005559CG-1 DNA-binding domain
PfamPF038594.6E-4821134IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.106.3E-7326416IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.75E-17328414IPR014756Immunoglobulin E-set
PfamPF018331.1E-5328414IPR002909IPT domain
CDDcd001020.00402328416No hitNo description
SMARTSM002481600356386IPR002110Ankyrin repeat
SuperFamilySSF484031.09E-15467619IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.1E-16518623IPR020683Ankyrin repeat-containing domain
CDDcd002041.87E-12523617No hitNo description
PROSITE profilePS5029716.494525619IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0065558590IPR002110Ankyrin repeat
PROSITE profilePS5008810.82558590IPR002110Ankyrin repeat
SMARTSM00248460597626IPR002110Ankyrin repeat
SuperFamilySSF525407.17E-8718771IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001513720742IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.986721750IPR000048IQ motif, EF-hand binding site
SMARTSM000157.1E-6743765IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.109744768IPR000048IQ motif, EF-hand binding site
PfamPF006128.2E-6747765IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 861 aa     Download sequence    Send to blast
MADTKCYIPN QLLDLDQIQQ EAQHRWLRPA EICEILTNYH KFQLRPSPPV MPPAGSLFLF  60
DRKVIRYFRK DGHRWRKKKD GKIVKEAHEK LKAGSVDVLH CYYAHGEDNE NFQRRSYWML  120
DKQYENIVLV HYREVKEGYK SSFSRGLNPD SRTLLQNSQS SEQTPHTSYG YDMNSVDKNE  180
QSVSSISNNE HSSQDFGIDS FTTDLLSYKL TDARLDSDTH SQDFLNSGNG FFSDHEVASQ  240
VNVNTEVINL QDNDAGGLKK MDSFGRWMCK ELGGEFDDSL MASDSGVYWN AIETETGNNK  300
TEVSSLSHHM QLNTSPVGPS LAQEQLFTIT DFAPDWAYLE TETKILITGN FLGDKKRMND  360
IKWCCMFGEI EVAAELLTEN AIRCQVPLHA AGRIPFYITC SNRLACSEVR EFEYIDKSTR  420
LTTDHHHHRD DDKTWDEEEF GLVIRLSKLL SLGVKLNKWL DCKVVDCEKC KMKDVFDLIL  480
RNKEWCSNRI TKELLIQNLL KDKLYERLVY EVHEACEGLR VLDEKGQGVI HLAGALGYEW  540
AVAPITATGV SPNFRDSHGR TALHWASLYG REETVVALMK FGAYAGAVDD PTPMNPGGQT  600
AADLASSKGH KGIAGYLAET DLTTHLSALS VKEKDKNGVK SEVLVDDDDA THSHSLKGSL  660
AAVRRSAHAA ALIQDAFRTR SFNQRQQQAT KAETEELVAI ASSSSLQKVK KTRDYEDYLH  720
LNIAASKIQQ KYRGWKGRNE FLKMRERVVK IQAHFRGHKV RKHYKKVVWS VGIVEKAILR  780
WRRKSRGLRG FRPELRAPES ESESEYDFLR IGRRQKYVGV EKALARVHSM ARNPEGQEQY  840
MRLVGKFEKL SHEHEDSSSS K
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023764288.10.0calmodulin-binding transcription activator 3-like isoform X1
TrEMBLA0A2J6LCN90.0A0A2J6LCN9_LACSA; Uncharacterized protein
STRINGcassava4.1_023110m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.21e-144Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains