PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa003879
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MIKC_MADS
Protein Properties Length: 214aa    MW: 24246.3 Da    PI: 5.2293
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S18769943PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF725.1e-23959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krie+ks r vtfskRr+g++ KA  LS LCd++vavi+fs +gklye+++
  Lsa003879  9 KRIEDKSSRLVTFSKRRTGLIEKARQLSGLCDVDVAVIVFSARGKLYEFCN 59
               79***********************************************95 PP
2K-box32.53.7e-121181714497
      K-box  44 esLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                e+Ls+ e+ qLe++L+++l + Rs+K++l++e +++lq++ek+l +e++++ ++
  Lsa003879 118 EELSVVEMTQLEEELDTALMQTRSRKTQLMMEYVSTLQQQEKDLIKEKEEIIQQ 171
                689*****************************************9999988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.614161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-25174IPR002100Transcription factor, MADS-box
SMARTSM004325.5E-31160IPR002100Transcription factor, MADS-box
CDDcd002652.03E-32279No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-23323IPR002100Transcription factor, MADS-box
PfamPF003193.2E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-233859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.60386178IPR002487Transcription factor, K-box
PfamPF014866.2E-8118170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MGRRKLEIKR IEDKSSRLVT FSKRRTGLIE KARQLSGLCD VDVAVIVFSA RGKLYEFCNG  60
RTANSVEHIL ARYEAENRSM KVDGQDSELP LKCTKFKTCK ELLQMVDRLV EENNSNNEEL  120
SVVEMTQLEE ELDTALMQTR SRKTQLMMEY VSTLQQQEKD LIKEKEEIIQ QNASAENVFG  180
IGGGGGGXGR NDDLSVNQMD SPQHLTLPLF IPNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-14177173MEF2C
5f28_B2e-14177173MEF2C
5f28_C2e-14177173MEF2C
5f28_D2e-14177173MEF2C
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023740659.11e-153agamous-like MADS-box protein AGL27
TrEMBLA0A2J6JY131e-105A0A2J6JY13_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10140.22e-35MIKC_MADS family protein