PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa003915

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

C2H2

Protein Properties

Length: 418aa MW: 45509.2 Da PI: 9.6059

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58687723	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2e-05	184	206	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cgk F +nL+ H + H Lsa003915 184 TCHKCGKQFGKLENLEAHHLSkH 206 7*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.224	183	211	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	185	206	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.58E-19	208	417	No hit	No description
Gene3D	G3DSA:3.90.228.10	8.0E-8	209	394	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MSTVWFSLKK SFHCKTDSSV VHDPKSKNHL STILTRKPGR CGCSRSIANL KDVINGGSKR 60 HSENTVNCSP RSIGSSDFPN PITHEVILNS SKCELKITGF NGGATADGST FVGTLLPGTP 120 SPCANPAMHF KKTPSRKMTE RDGNGIGIGN SGHLGVFGKN STFIQKTRHP SGKESEEYSG 180 EGVTCHKCGK QFGKLENLEA HHLSKHAVTE LMEGDSSRKI VEIICRSSWI KSDNTSGRIE 240 KILKVHNMPK TLARFEEYRE SVKTKASKLP KKHPRCLADG NELLRFYGAT IACSLGINGA 300 SSSLCVSDKC CVCRIIRDGF STKREIKGGI GVFTTSTSGR AFESIEVIEE GPDTRKALIV 360 CRVIAGRVHR PLENIREMAG QAGFDSLAGK LGLYSNIEEL YLLSPRALLP CFVVICKH

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MSTVWFSLKK SFHCKTDSSV VHDPKSKNHL STILTRKPGR CGCSRSIANL KDVINGGSKR  60
HSENTVNCSP RSIGSSDFPN PITHEVILNS SKCELKITGF NGGATADGST FVGTLLPGTP  120
SPCANPAMHF KKTPSRKMTE RDGNGIGIGN SGHLGVFGKN STFIQKTRHP SGKESEEYSG  180
EGVTCHKCGK QFGKLENLEA HHLSKHAVTE LMEGDSSRKI VEIICRSSWI KSDNTSGRIE  240
KILKVHNMPK TLARFEEYRE SVKTKASKLP KKHPRCLADG NELLRFYGAT IACSLGINGA  300
SSSLCVSDKC CVCRIIRDGF STKREIKGGI GVFTTSTSGR AFESIEVIEE GPDTRKALIV  360
CRVIAGRVHR PLENIREMAG QAGFDSLAGK LGLYSNIEEL YLLSPRALLP CFVVICKH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023756624.1	0.0	uncharacterized protein LOC111905182
TrEMBL	A0A2J6LTV7	0.0	A0A2J6LTV7_LACSA; Uncharacterized protein
STRING	XP_010267823.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-167	C2H2 family protein