PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa003943
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 243aa    MW: 28266.9 Da    PI: 9.3017
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-14568PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.81.4e-092774348
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                      WT  Ed+l+ +a    + +   +W+ Ia+ ++ g+t++q+k ++ k+l
        Lsa003943 27 TWTRYEDKLFERALVDVPENiteRWDEIAKAVP-GKTAEQVKIHFMKLL 74
                     7********************************.************986 PP
2Myb_DNA-binding353.2e-11133177347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++++ k++G+g+W++I+r    +Rt+ q  s+ qky
        Lsa003943 133 PWTQEEHRNFLKGLKLYGKGDWRSISRNCVITRTPTQGASHAQKY 177
                      8**************************99989*****99999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.992376IPR017884SANT domain
SMARTSM007177.8E-72476IPR001005SANT/Myb domain
SuperFamilySSF466894.74E-112476IPR009057Homeodomain-like
PfamPF002497.4E-82774IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-62775IPR009057Homeodomain-like
CDDcd001671.08E-72774No hitNo description
PROSITE profilePS5129417.396126182IPR017930Myb domain
SuperFamilySSF466893.88E-15127183IPR009057Homeodomain-like
TIGRFAMsTIGR015576.9E-15129181IPR006447Myb domain, plants
SMARTSM007171.0E-7130180IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-10130169IPR009057Homeodomain-like
PfamPF002492.8E-9133177IPR001005SANT/Myb domain
CDDcd001679.87E-8133178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MENQINSCIY DQQKIARIQF QSTAESTWTR YEDKLFERAL VDVPENITER WDEIAKAVPG  60
KTAEQVKIHF MKLLHDLDAI ESGHFEFPKY KDNYDEKESI VSLDSELRRS QISFRAAGRG  120
SRHGECERKK GTPWTQEEHR NFLKGLKLYG KGDWRSISRN CVITRTPTQG ASHAQKYFLR  180
QSSLTKERKR ASIHDITTTM VMQPPLLTSG QGGARHGYEY QKNFWCPIED QHLVNKFSTK  240
LLP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023767673.10.0transcription factor DIVARICATA-like
TrEMBLA0A2J6L5950.0A0A2J6L595_LACSA; Uncharacterized protein
STRINGXP_008231910.12e-65(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.14e-60MYB family protein