PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa004000

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

WRKY

Protein Properties

Length: 495aa MW: 55060.9 Da PI: 6.5112

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58689123	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.1	2.3e-30	239	298	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ Lsa004000 239 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGNHNHP 298 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-32	224	300	IPR003657	WRKY domain
SuperFamily	SSF118290	1.31E-27	232	300	IPR003657	WRKY domain
PROSITE profile	PS50811	29.275	234	300	IPR003657	WRKY domain
SMART	SM00774	2.2E-37	239	299	IPR003657	WRKY domain
Pfam	PF03106	5.4E-27	240	298	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence Send to blast
MEIDLTLKLD AQDQEPVRDS SESYHQDQVN EDDDDRQVPS PEHQVQHSEL DVQTGTDPTE 60 APKKQDLDHR NEEKLSILQI EMNRMKEENK VLRQVVEQTM KDYYDLQMKF SVVRQSSSQF 120 KDPKAFLSLN GHDKDQDIKK ISPRSSPLQE SENENLGLSL RIQGNTTTSP HARDHQEGNH 180 KDLSETTTKF MPMQQDNLMN SGNFGGENKA SNIANNPMAS LPNRKARVSV RARCESATMN 240 DGCQWRKYGQ KIAKGNPCPR AYYRCTVAPG CPVRKQVQRC LEDMSILITT YEGNHNHPLP 300 VGATAMASTT SAASTSFMLM DSNNHISSEL RAMNQQPFAN YHMSSNILNS NSSPYSSAHM 360 TPNDPTKGLV FDLTNNPLNP HHSPSSQLGF PWMPNSFPIN ESHFSRPKQV DGINGVWQGG 420 EDSNNNNKSI LAENMSAIAS HPKFRVAVAA AISSIINKES QISNNIHADG PRDRESGGSS 480 SGGKTWVLES LSRSG

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence Send to blast

MEIDLTLKLD AQDQEPVRDS SESYHQDQVN EDDDDRQVPS PEHQVQHSEL DVQTGTDPTE  60
APKKQDLDHR NEEKLSILQI EMNRMKEENK VLRQVVEQTM KDYYDLQMKF SVVRQSSSQF  120
KDPKAFLSLN GHDKDQDIKK ISPRSSPLQE SENENLGLSL RIQGNTTTSP HARDHQEGNH  180
KDLSETTTKF MPMQQDNLMN SGNFGGENKA SNIANNPMAS LPNRKARVSV RARCESATMN  240
DGCQWRKYGQ KIAKGNPCPR AYYRCTVAPG CPVRKQVQRC LEDMSILITT YEGNHNHPLP  300
VGATAMASTT SAASTSFMLM DSNNHISSEL RAMNQQPFAN YHMSSNILNS NSSPYSSAHM  360
TPNDPTKGLV FDLTNNPLNP HHSPSSQLGF PWMPNSFPIN ESHFSRPKQV DGINGVWQGG  420
EDSNNNNKSI LAENMSAIAS HPKFRVAVAA AISSIINKES QISNNIHADG PRDRESGGSS  480
SGGKTWVLES LSRSG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-21	226	302	1	76	WRKY transcription factor 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023730594.1	0.0	probable WRKY transcription factor 9
TrEMBL	A0A2J6KMP0	0.0	A0A2J6KMP0_LACSA; Uncharacterized protein
STRING	EOX97400	1e-122	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	3e-70	WRKY DNA-binding protein 9