PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa004050
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 314aa    MW: 34866.5 Da    PI: 6.1855
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-40773PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.1e-09157204455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++iN ++  L+el+P +    +k    a++L + +++++ Lq
  Lsa004050 157 SHSLAERARREKINARMKLLQELVPGC----NKISGTAMVLDEIINHVQTLQ 204
                8*************************9....89999*************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.59E-10151208No hitNo description
SuperFamilySSF474595.23E-15151221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.342153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-15153216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-7157204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-8159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGVESFQFGE DDIQSLMSVV PPPEPGNSFT ALLELPPNQA VKLLHSPEET TPPAIFPPSV  60
FPAMETDNSL ETTSSILPNS SPNYCNLVKQ EPIDSDSLHN SSPIQSDPII PKLTKRKERE  120
KKVKPSVKKI KNVANETDSE KLPYVHVRAR RGQATDSHSL AERARREKIN ARMKLLQELV  180
PGCNKISGTA MVLDEIINHV QTLQRQVEFL SMRLAAVHPC IDINLDNIFS AESGSLMDCS  240
FAGMVSLDGQ MNGNSHNHHH HHQQLWQQQQ PDGMPLQGLW GGEDLHLHPN FLTPDDSLLS  300
MTHLGIQLLC IHSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023749595.10.0transcription factor bHLH48-like
RefseqXP_023749596.10.0transcription factor bHLH48-like
SwissprotQ8VZ026e-68BH048_ARATH; Transcription factor bHLH48
TrEMBLA0A2J6JG150.0A0A2J6JG15_LACSA; Uncharacterized protein
STRINGEOY094033e-92(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.28e-71bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]