PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa004077
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family B3
Protein Properties Length: 204aa    MW: 23841 Da    PI: 7.9177
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S29949472PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.91.9e-1817106198
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                ffk  +p++ +++  l++p  f++ +g +   +++  l + s +sW+v +  +k ++ +++++GW++Fv+ n L+ gDf++F+++g s+f  +v++  
  Lsa004077  17 FFKFYMPAHCSTQ--LRIPPAFLKYFGDS--LPFKFNLITCSRNSWKVDM--NKIDDDVYFKSGWEKFVQGNSLEFGDFLIFYYNGGSNF--FVSISG 106
                7788877776665..9*******544655..999****************..********************************998888..888876 PP
2B337.15.6e-121322001184
                HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
         B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                 ++++l lp+ f e     kee + +   +  gr+W+vk+    + +r+ +t+GW+ F+ +n   +gD++ Fk+
  Lsa004077 132 KQTQQLNLPRVFYEGV---KEEYRSMAKLQHLGRTWDVKV--VDCCDRIRFTDGWRVFAMENCFGVGDVCCFKF 200
                55678999**999655...4444455556669********..9*****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.67E-2411110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.2E-2211109IPR015300DNA-binding pseudobarrel domain
CDDcd100171.47E-1515104No hitNo description
SMARTSM010192.8E-1617108IPR003340B3 DNA binding domain
PfamPF023621.3E-1517105IPR003340B3 DNA binding domain
PROSITE profilePS5086312.29430108IPR003340B3 DNA binding domain
PROSITE profilePS5086310.024122204IPR003340B3 DNA binding domain
SMARTSM010190.069126204IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-13130200IPR015300DNA-binding pseudobarrel domain
PfamPF023625.7E-9132200IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-11135200IPR015300DNA-binding pseudobarrel domain
CDDcd100172.10E-7137200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MAENNTGILN SEQCPQFFKF YMPAHCSTQL RIPPAFLKYF GDSLPFKFNL ITCSRNSWKV  60
DMNKIDDDVY FKSGWEKFVQ GNSLEFGDFL IFYYNGGSNF FVSISGKNNC LKENNNTESE  120
NQQHPYKKQK QKQTQQLNLP RVFYEGVKEE YRSMAKLQHL GRTWDVKVVD CCDRIRFTDG  180
WRVFAMENCF GVGDVCCFKF GDVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-141611010104At1g16640
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023770350.15e-86putative B3 domain-containing protein At5g66980
TrEMBLA0A2J6KZE41e-131A0A2J6KZE4_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-17B3 family protein