PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa004130

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Trihelix

Protein Properties

Length: 466aa MW: 53293.4 Da PI: 5.9112

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58657935	PU_unref	Unigene	View CDS
gnl\|UG\|Lsa#S58680623	PU_unref	Unigene	View CDS
PUT-187a-Lactuca_sativa-4356381	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	108.2	5.3e-34	244	329	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k e+ aLi++r++++ +++++ +k+plWee+s++mr+ g++r++k+Ckekwen+nk+ykk+k+g+kkr +e+s+tcpyf+ql+a Lsa004130 244 RWPKAEINALITLRTQLDMNYQENTAKGPLWEEISAAMRKLGYNRNAKRCKEKWENINKYYKKMKDGNKKR-PEDSKTCPYFHQLDA 329 8*******************************************************************8.99*********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	1.2E-4	241	303	IPR001005	SANT/Myb domain
CDD	cd12203	3.48E-26	243	308	No hit	No description
PROSITE profile	PS50090	7.097	243	301	IPR017877	Myb-like domain
Pfam	PF13837	3.5E-24	244	330	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.2E-4	244	301	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
XVMAVMPPQP VMNQKRTFPF SQPNMSGSTN SATSSDTFSD DEPPQKKRKW QDFFGKLMKE 60 VIEKQEELQK RFLDTIERRE RDRVAREEAW RAQEIAKMNQ EHDRLVKERS IAAAKDAAVI 120 TFLQKMTGKN PDTVDXNKKK ASRYCRTYSI VIVTVQKFFS MKSWINXVDF INLTVFFVDF 180 LAPPIPLAST LPVIQQQQIH QTPPPPPPPR HEILQVAVPP SPMVKNLDGD VSGGDNMLLP 240 SPSRWPKAEI NALITLRTQL DMNYQENTAK GPLWEEISAA MRKLGYNRNA KRCKEKWENI 300 NKYYKKMKDG NKKRPEDSKT CPYFHQLDAI YREKATAIVA RPEQQWPPAT MVQEKTPPPP 360 PPQQQQQQQS TNGVYVEKRD DYPGFTGKPE TQTAPVVAWP QQQWRVPAAL QETQQQPQPQ 420 SAADMEDQGS ENTDDYDDDD DEDEDKEEEG GGYEIVASKI SSVATV

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

XVMAVMPPQP VMNQKRTFPF SQPNMSGSTN SATSSDTFSD DEPPQKKRKW QDFFGKLMKE  60
VIEKQEELQK RFLDTIERRE RDRVAREEAW RAQEIAKMNQ EHDRLVKERS IAAAKDAAVI  120
TFLQKMTGKN PDTVDXNKKK ASRYCRTYSI VIVTVQKFFS MKSWINXVDF INLTVFFVDF  180
LAPPIPLAST LPVIQQQQIH QTPPPPPPPR HEILQVAVPP SPMVKNLDGD VSGGDNMLLP  240
SPSRWPKAEI NALITLRTQL DMNYQENTAK GPLWEEISAA MRKLGYNRNA KRCKEKWENI  300
NKYYKKMKDG NKKRPEDSKT CPYFHQLDAI YREKATAIVA RPEQQWPPAT MVQEKTPPPP  360
PPQQQQQQQS TNGVYVEKRD DYPGFTGKPE TQTAPVVAWP QQQWRVPAAL QETQQQPQPQ  420
SAADMEDQGS ENTDDYDDDD DEDEDKEEEG GGYEIVASKI SSVATV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023758037.1	0.0	trihelix transcription factor GT-2-like
TrEMBL	A0A2J6LR21	0.0	A0A2J6LR21_LACSA; Uncharacterized protein
STRING	Solyc12g056510.1.1	1e-90	(Solanum lycopersicum)