PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa004150

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bHLH

Protein Properties

Length: 385aa MW: 42311.9 Da PI: 6.1701

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58684444	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-2056379	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13	0.00019	290	322	17	54
HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ L++l+ + +K + a++L +A+eYIk L Lsa004150 290 GDRVTALQQLVSPF-----GKTDTASVLHEAIEYIKLL 322 55666677777776.....8****************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.439	273	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.64E-11	283	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-7	283	342	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.16E-4	283	326	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MAEEFQGEVC GGSWWSSPRT TTFIGSSYMS NYGGCWPQSD IMNMKTRSTD ESSGGRTTTI 60 SPDSAFQMMG SPPSTTTNWN QALLVNGRSE ESYSQTLPEI MNNLPSGGHD SSNFGMDEQQ 120 PSNFITSSGD SNGNLGGTSY GYPSSLLQTL FHNTSPPPPA APSQQPLYDF QSNLDDYNSV 180 SSMPGFSSSV KSKQQALGGL HLANKTPFWN ASTLDLNHNR AGFFTSTQSP FLSSTYEEKP 240 IFPNNKSQNE QIRDLGSSVK KSSGEPTFKR PRLETPSPLP TFKVRKEKLG DRVTALQQLV 300 SPFGKTDTAS VLHEAIEYIK LLHDQVNVLS APYMKNGATM QRQQIHDKVK TIMEDKQQDL 360 RSRGLCLVPV SSTFPVTTEA ATDYW

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MAEEFQGEVC GGSWWSSPRT TTFIGSSYMS NYGGCWPQSD IMNMKTRSTD ESSGGRTTTI  60
SPDSAFQMMG SPPSTTTNWN QALLVNGRSE ESYSQTLPEI MNNLPSGGHD SSNFGMDEQQ  120
PSNFITSSGD SNGNLGGTSY GYPSSLLQTL FHNTSPPPPA APSQQPLYDF QSNLDDYNSV  180
SSMPGFSSSV KSKQQALGGL HLANKTPFWN ASTLDLNHNR AGFFTSTQSP FLSSTYEEKP  240
IFPNNKSQNE QIRDLGSSVK KSSGEPTFKR PRLETPSPLP TFKVRKEKLG DRVTALQQLV  300
SPFGKTDTAS VLHEAIEYIK LLHDQVNVLS APYMKNGATM QRQQIHDKVK TIMEDKQQDL  360
RSRGLCLVPV SSTFPVTTEA ATDYW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023758592.1	0.0	transcription factor bHLH112-like
TrEMBL	A0A2J6MGW5	0.0	A0A2J6MGW5_LACSA; Uncharacterized protein
STRING	VIT_00s0274g00070.t01	1e-110	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	3e-54	bHLH family protein