PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa004323
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family WRKY
Protein Properties Length: 504aa    MW: 56301.6 Da    PI: 8.0139
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58689368PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.35.6e-32186244160
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                ldDgynWrKYGqK+vkgse+prsYY+C+ ++C+++kkve+s+ d++++ei+Y+g+Hnh+k
  Lsa004323 186 LDDGYNWRKYGQKQVKGSENPRSYYKCSDRNCSMRKKVETSS-DGDITEIVYKGNHNHPK 244
                59****************************************.***************85 PP
2WRKY104.84.5e-33346404159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+Ct+++C+v+k+ver+++d + v++tYeg+Hnh+
  Lsa004323 346 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTPNCSVRKHVERASHDMRSVITTYEGKHNHD 404
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-28174245IPR003657WRKY domain
PROSITE profilePS5081124.593181245IPR003657WRKY domain
SuperFamilySSF1182909.42E-24182245IPR003657WRKY domain
SMARTSM007741.0E-33186244IPR003657WRKY domain
PfamPF031069.1E-25187243IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.2E-36331405IPR003657WRKY domain
SuperFamilySSF1182901.07E-28338405IPR003657WRKY domain
PROSITE profilePS5081136.288341406IPR003657WRKY domain
SMARTSM007749.6E-38346405IPR003657WRKY domain
PfamPF031065.1E-25347404IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
XLTFSSEPPL MSSSGISFES PSNSPPSPPP PSTTAVPPAA GVPKFKSTPP PLLPITPPAF  60
SPSSYFSFTG ALTSADLLDS PLLLSSSHIL PSPTTGSFPL QASNWTSNYQ SQEHGIKKEH  120
DNFTDFPFQT QSNPNTVSFQ EIYQQPRIED DRSLVKSEYS FQKQSFESNY PTNRNIYNHR  180
SSQKKLDDGY NWRKYGQKQV KGSENPRSYY KCSDRNCSMR KKVETSSDGD ITEIVYKGNH  240
NHPKPQSTKR SSSSSVSNNS LVMNQFNDFQ DQSHGSGQWE LIGTPENSSV SIGDDEFDRS  300
TSGGDEFIEN ETPAKRLKIE SENEGISRTV RESRVVVQTI SDIDILDDGY RWRKYGQKVV  360
KGNPNPRSYY KCTTPNCSVR KHVERASHDM RSVITTYEGK HNHDVSPARG VGHRQLLSSN  420
QDNNVANVTI NTSKLLYRHP SNSMINQIYG STLRAPSETQ FTLEMLQNSQ SFGLSGFEDT  480
IRSSYMSRQP SSGSIFAKAK DEPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-32186405877Probable WRKY transcription factor 4
2lex_A5e-32186405877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023750044.10.0LOW QUALITY PROTEIN: probable WRKY transcription factor 25
SwissprotQ6B6R41e-110WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A2J6M8L70.0A0A2J6M8L7_LACSA; Uncharacterized protein
STRINGEMJ094891e-148(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.13e-92WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]