PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa004420
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family B3
Protein Properties Length: 333aa    MW: 37395.7 Da    PI: 5.2452
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58690068PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-51419PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.83.5e-17114212196
                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                f k+l +sdv+ ++r+vlpkk ae+h   ++ +e++ + + d  s  +W +k+++  +++s++yvl+ G+ eF+++++L+ gD +++++d+ ++ ++v++
  Lsa004420 114 FSKKLQKSDVGVLKRIVLPKKAAETHlpALIAKEGIIMEMDDiDSMHVWCFKFRFwpNNNSRMYVLE-GTGEFAEEHELQLGDYIMLYRDS-MNLNYVIQ 211
                889*************************8888999*******5556*******9989999999***9.********************654.88888877 PP

                E CS
         B3  96 v 96 
                +
  Lsa004420 212 A 212
                6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.0E-23111210IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-19112211IPR015300DNA-binding pseudobarrel domain
CDDcd100175.10E-23112211No hitNo description
SMARTSM010194.6E-16114216IPR003340B3 DNA binding domain
PROSITE profilePS508639.136114216IPR003340B3 DNA binding domain
PfamPF023621.0E-13114212IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDMVEGNEAC GLRAFGGFEI GLRMGVGINF AGVQDTTYKT DNKSSSSADV VAPAADPVVV  60
DRDLVAAARF DLLKKKRMPR FRRGTSAAAV RSFTSFPSFL PATIADHGRL TFLFSKKLQK  120
SDVGVLKRIV LPKKAAETHL PALIAKEGII MEMDDIDSMH VWCFKFRFWP NNNSRMYVLE  180
GTGEFAEEHE LQLGDYIMLY RDSMNLNYVI QAVKAYEVEE FTKKEMKTNP TPQVKSVKAP  240
PPPPPVDNGL MNQNWLWGGP EMEVFNPTNT NTNYPMNIST VEEHMGMNFV YDTSYSNDTM  300
TPLDFLGGFM TNYPATQPSF TIENLSIDDL YKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A1e-451102201111B3 domain-containing transcription factor FUS3
6j9b_D1e-451102201111B3 domain-containing transcription factor FUS3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023733909.10.0B3 domain-containing transcription factor FUS3-like
TrEMBLA0A2J6KFA40.0A0A2J6KFA4_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.14e-58B3 family protein