PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa004503

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

SBP

Protein Properties

Length: 1056aa MW: 116783 Da PI: 8.07

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58696672	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-44548	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.4	6.3e-41	158	235	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCevhska ++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ Lsa004503 158 MCQVDNCKEDLSTAKDYHRRHKVCEVHSKAGKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 235 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	7.2E-33	154	220	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.872	156	233	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.44E-37	157	237	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	8.2E-30	159	232	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	7.75E-6	835	936	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	8.25E-5	840	935	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1056 aa Download sequence Send to blast
MEEVGTQLAP PLYMYNTIGA GRFPDAHPMA KKRSLPYQNP NLIQHQQQQQ YLQRLIPTLN 60 EPRNSWNPKN WEWDSSRLVA KPLDMMEISR EQQQQQHHHQ TAVNPPNPDG SKKSPVGQRE 120 EDERLLLKLG GGEEAATRPS KRVRSGSPGS GCAGNYPMCQ VDNCKEDLST AKDYHRRHKV 180 CEVHSKAGKA LVGKQMQRFC QQCSRFHPLS EFDEGKRSCR RRLAGHNRRR RKTQPEDVAL 240 QLLIPGNGDK NGANDMDIVG LLTVLARAQG NAEDMSRNSS PLPNKDQLMQ ILNKINSLPL 300 PVDPGSKQPV PGSLTNVDQE KTSSEVQKVN KKTSSSTMDF LGVLSGSSDA PEPLSQKRNQ 360 VIEADKNKTN SGCVNQTMVH SGGERSSTSF QSREDSDCQV MDTPLNLQLQ LFSSSPEDDS 420 PPKLASSRKY FSSDSSNPME DRSPSSSPPV VQRLFPTKAS RERMKPESMS TSGEVTANVK 480 ATMSLELFGG MNNGADNVSI QSSPYRAGYT SSSGSDQSPS SLNSDPQDRT GRLSFKLFDK 540 DPSHLPGSLR TQVYNWLSQS PSEMEGYIKP GCVVLSIYLS MSSSSWDQLE GNFLQYINAL 600 VQESGTDFWG SGRFLAHTEK QIASHKDGKV HLFKSLKAWS SPQLISISPL AVVSGKETSF 660 VLRGRNLRTP GTKIYCTHAD GCILEEATES TDQDSTYEEI STRRFTICAP SERGRCFIEI 720 ENGFRGTSFP IIIADSTLCQ ELNLLEAEFG EVQNRQPSLV KETIHFLNEL GWLFQKKNGG 780 SGSHYSLTRF KFLLVFSVER DLCGLVKTLL GILLQKGSGG ITEDDSSMEM LYTINLLNRA 840 VKRKCKNMVD LLIHYSVVGD TDTDSAASRK YIFPPNLAGP GGITPLHLAA CTSDSDDMVD 900 ALTNDPNEVG LLSWNSSLDA NGLSPFVYAT MRNNNSYNTL VAQKLANRIA GQVSVHISNE 960 IELQTARRVD HVDHHELSFR VRDHHVGTKS CSKCAIVTAK HPRRIPGSQG LLHRPYIHSM 1020 LAIAAVCVCV CLFLRGAPNI GLVAPFKWEN LNFGSM

Sequence ? help Back to Top

Protein Sequence Length: 1056 aa Download sequence Send to blast

MEEVGTQLAP PLYMYNTIGA GRFPDAHPMA KKRSLPYQNP NLIQHQQQQQ YLQRLIPTLN  60
EPRNSWNPKN WEWDSSRLVA KPLDMMEISR EQQQQQHHHQ TAVNPPNPDG SKKSPVGQRE  120
EDERLLLKLG GGEEAATRPS KRVRSGSPGS GCAGNYPMCQ VDNCKEDLST AKDYHRRHKV  180
CEVHSKAGKA LVGKQMQRFC QQCSRFHPLS EFDEGKRSCR RRLAGHNRRR RKTQPEDVAL  240
QLLIPGNGDK NGANDMDIVG LLTVLARAQG NAEDMSRNSS PLPNKDQLMQ ILNKINSLPL  300
PVDPGSKQPV PGSLTNVDQE KTSSEVQKVN KKTSSSTMDF LGVLSGSSDA PEPLSQKRNQ  360
VIEADKNKTN SGCVNQTMVH SGGERSSTSF QSREDSDCQV MDTPLNLQLQ LFSSSPEDDS  420
PPKLASSRKY FSSDSSNPME DRSPSSSPPV VQRLFPTKAS RERMKPESMS TSGEVTANVK  480
ATMSLELFGG MNNGADNVSI QSSPYRAGYT SSSGSDQSPS SLNSDPQDRT GRLSFKLFDK  540
DPSHLPGSLR TQVYNWLSQS PSEMEGYIKP GCVVLSIYLS MSSSSWDQLE GNFLQYINAL  600
VQESGTDFWG SGRFLAHTEK QIASHKDGKV HLFKSLKAWS SPQLISISPL AVVSGKETSF  660
VLRGRNLRTP GTKIYCTHAD GCILEEATES TDQDSTYEEI STRRFTICAP SERGRCFIEI  720
ENGFRGTSFP IIIADSTLCQ ELNLLEAEFG EVQNRQPSLV KETIHFLNEL GWLFQKKNGG  780
SGSHYSLTRF KFLLVFSVER DLCGLVKTLL GILLQKGSGG ITEDDSSMEM LYTINLLNRA  840
VKRKCKNMVD LLIHYSVVGD TDTDSAASRK YIFPPNLAGP GGITPLHLAA CTSDSDDMVD  900
ALTNDPNEVG LLSWNSSLDA NGLSPFVYAT MRNNNSYNTL VAQKLANRIA GQVSVHISNE  960
IELQTARRVD HVDHHELSFR VRDHHVGTKS CSKCAIVTAK HPRRIPGSQG LLHRPYIHSM  1020
LAIAAVCVCV CLFLRGAPNI GLVAPFKWEN LNFGSM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-30	146	232	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023772722.1	0.0	squamosa promoter-binding-like protein 14
Refseq	XP_023772793.1	0.0	squamosa promoter-binding-like protein 14
Refseq	XP_023772852.1	0.0	squamosa promoter-binding-like protein 14
Swissprot	Q8RY95	0.0	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	A0A2J6MJI4	0.0	A0A2J6MJI4_LACSA; Uncharacterized protein
STRING	VIT_18s0122g00380.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]