PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa004511
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family Trihelix
Protein Properties Length: 332aa    MW: 37804.4 Da    PI: 9.0706
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58683932PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix539e-1760152286
   trihelix   2 WtkqevlaLiearr.emeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                Wt +e+l+Li+a++ ++e+r++++             + +W++v +++++ g+ rs++qC++kw+nl ++ykk++e e +   +++ + p + +++
  Lsa004511  60 WTLEETLVLITAKKlDDERRINATTsatansraatGGELRWKWVENYCWSNGCFRSQNQCNDKWDNLLRDYKKVREYELRS--PAQ-NRPSYWSMD 152
                *************96333333332133444444448899**************************************9985..332.456777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-450129IPR009057Homeodomain-like
PROSITE profilePS500907.22452127IPR017877Myb-like domain
PfamPF138371.8E-1259153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MSEPPNTSTT TPPNIVNVTP YPAIAYKNHH LPPITHGGAT TSNVVLLPAS NHREYRKGNW  60
TLEETLVLIT AKKLDDERRI NATTSATANS RAATGGELRW KWVENYCWSN GCFRSQNQCN  120
DKWDNLLRDY KKVREYELRS PAQNRPSYWS MDKTQRKDRN LPSNLLLNIY EALNDVVQKK  180
TPQRHCLPQQ QPPLAVLPPP QPPPSSLPPP QPSSSQHHPP PPPPPPPPAS EASVESSETE  240
GEDADNDNKR RRVRDIGSSI VHSTRVLSET LKRFEEKKEK RHRELMELEE QRLHLEETRN  300
EVNRQGITGL ITSINKLSDA IYALISEKRD RP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248252KRRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023742188.10.0trihelix transcription factor ASR3-like
TrEMBLA0A2J6MAZ60.0A0A2J6MAZ6_LACSA; Uncharacterized protein
STRINGcassava4.1_022367m4e-95(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.12e-47Trihelix family protein