PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa004569
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C2H2
Protein Properties Length: 280aa    MW: 32257.5 Da    PI: 8.7144
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58682026PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-35732PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00033128150223
                EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                +C+ C+++++++ +L  H +  H
  Lsa004569 128 SCSVCSRVYPTSRLLSIHVSEaH 150
                6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551.1100125IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280102125IPR007087Zinc finger, C2H2
SMARTSM003557127150IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280129150IPR007087Zinc finger, C2H2
SMARTSM003551.4165190IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280167190IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
XQLLAILAVE FGKISCLFNR RFHNHLSTSM MMVDNHLQTK TQLQSEFQYW FPVLRRFGPD  60
DPFFASGNIE RELLAKQITL DLTEEEKQEI RNFEDKYREV LCPIVGCGAT LKTLTEFEDH  120
YNARHTSSCS VCSRVYPTSR LLSIHVSEAH DSFFQAKAAR GYPMYECLVE GCGVKLKSYK  180
SRHQHLMDKH KFPSTYEFLK KSHPSKKERV KKYQCKQKHV ADEGEESSAM QVEEETLDGL  240
VSGVSKLTTS DSSPSVVSFG RRHTRGLTFL PRSVQRETKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023740874.10.0zinc finger protein 511
TrEMBLA0A2J6MB230.0A0A2J6MB23_LACSA; Uncharacterized protein
STRINGXP_004166425.11e-122(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-114zinc ion binding;nucleic acid binding;zinc ion binding