PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa004643

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Trihelix

Protein Properties

Length: 355aa MW: 39433.5 Da PI: 10.0732

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58687692	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.1	3.6e-16	47	130	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L+ea++ ++ +r+klk+++We+v+k++ + + ++++qCk+k+e+++kry+ + +++ s++p+f +l+ Lsa004643 47 EWSEGAVSSLLEAYEAKWVLRNRAKLKGHDWEDVAKYVssraNSSKSPKTQTQCKNKIESMKKRYRSESATSDV------SSWPLFPRLD 130 5***********************************87777777888999**********99988874......57**9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.8E-19	45	130	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MDNNKPNKQE TPSPFTNKDH DSSPRKPPLP SASVAGGSGG DRLKRDEWSE GAVSSLLEAY 60 EAKWVLRNRA KLKGHDWEDV AKYVSSRANS SKSPKTQTQC KNKIESMKKR YRSESATSDV 120 SSWPLFPRLD LLLRGSGGPP VVTSGGDPPS SSTPVANKLP LMVFEHTPPP PPPPMIQSSS 180 PPVTLPVPLP VATPAHQVIG QNSIDSNGLD RENKEDDVVG IKTSEKEINQ VSEKMEIETD 240 CSTPALYSNE KGKIQTKNQN HKNTNNRKRR RKGERESWDV AESIRWLAKV MVRSEQAKVE 300 TMRELEKMRA DAEVKRGEID LKRTEIIAHT QLEIARLFAT SFGKTVDPSL RIGRS

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MDNNKPNKQE TPSPFTNKDH DSSPRKPPLP SASVAGGSGG DRLKRDEWSE GAVSSLLEAY  60
EAKWVLRNRA KLKGHDWEDV AKYVSSRANS SKSPKTQTQC KNKIESMKKR YRSESATSDV  120
SSWPLFPRLD LLLRGSGGPP VVTSGGDPPS SSTPVANKLP LMVFEHTPPP PPPPMIQSSS  180
PPVTLPVPLP VATPAHQVIG QNSIDSNGLD RENKEDDVVG IKTSEKEINQ VSEKMEIETD  240
CSTPALYSNE KGKIQTKNQN HKNTNNRKRR RKGERESWDV AESIRWLAKV MVRSEQAKVE  300
TMRELEKMRA DAEVKRGEID LKRTEIIAHT QLEIARLFAT SFGKTVDPSL RIGRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	266	270	RKRRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023732875.1	0.0	trihelix transcription factor ASIL2
TrEMBL	A0A2J6KHG0	0.0	A0A2J6KHG0_LACSA; Uncharacterized protein
STRING	XP_002513038.1	1e-112	(Ricinus communis)
STRING	XP_004307092.1	1e-112	(Fragaria vesca)