PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa004662

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

C2H2

Protein Properties

Length: 429aa MW: 46230.8 Da PI: 9.526

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S29960961	PU_unref	Unigene	View CDS
gnl\|UG\|Lsa#S58680396	PU_unref	Unigene	View CDS
PUT-187a-Lactuca_sativa-2768	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.2	3.4e-06	196	218	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cgk F ++nL+ H + H Lsa004662 196 TCHKCGKQFGKWENLEAHHLSkH 218 7*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.078	195	223	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	197	218	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.63E-21	220	428	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.0E-7	221	402	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MPTVWFSLKK SLHCKSEPSE VHDPKSKKQL ATILTRKPGR SGCSRSIANL KDVINGGSKR 60 HSEKPVSCSP RSIGSSEFLN PITHEVILND SRCELKITGF GGGFHDVSGG AAAGGGGGDG 120 STFVGTLMPG TPGPGGHPTM HTFKNHQTPT RRTVSSSDGN GIANSGNSTG KNGIGIPQKP 180 RPSMETESYG SSGAVTCHKC GKQFGKWENL EAHHLSKHAV TELMEGDSSR KIVEIICRSS 240 WLKSENTSGR IEKVLKVHNM QKTLSRFEDY RELVKTKASK LPKKHPRCLA DGNELLRFYG 300 TTISCSLGIN GHSSLCISDK CCVCRIIRNG FSTPKELKGG IGVFTTSTSV RAFESIEVCD 360 DSLDTRKALM VCRVIAGRVH RPLENIQEIS GQSGFDSLAG KVGVHSNIED LYLLSPKALL 420 PCFVVICRV

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MPTVWFSLKK SLHCKSEPSE VHDPKSKKQL ATILTRKPGR SGCSRSIANL KDVINGGSKR  60
HSEKPVSCSP RSIGSSEFLN PITHEVILND SRCELKITGF GGGFHDVSGG AAAGGGGGDG  120
STFVGTLMPG TPGPGGHPTM HTFKNHQTPT RRTVSSSDGN GIANSGNSTG KNGIGIPQKP  180
RPSMETESYG SSGAVTCHKC GKQFGKWENL EAHHLSKHAV TELMEGDSSR KIVEIICRSS  240
WLKSENTSGR IEKVLKVHNM QKTLSRFEDY RELVKTKASK LPKKHPRCLA DGNELLRFYG  300
TTISCSLGIN GHSSLCISDK CCVCRIIRNG FSTPKELKGG IGVFTTSTSV RAFESIEVCD  360
DSLDTRKALM VCRVIAGRVH RPLENIQEIS GQSGFDSLAG KVGVHSNIED LYLLSPKALL  420
PCFVVICRV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023764228.1	0.0	uncharacterized protein LOC111912727
TrEMBL	A0A2J6LD33	0.0	A0A2J6LD33_LACSA; Uncharacterized protein
STRING	XP_010267823.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-165	C2H2 family protein