PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa004734

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

C2H2

Protein Properties

Length: 379aa MW: 42840.8 Da PI: 9.6872

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S32108859	PU_unref	Unigene	View CDS
PUT-187a-Lactuca_sativa-34250	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0015	346	365	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cg+ F +++ L++H++++ Lsa004734 346 CSQCGRQF-NPEKLHTHMKSC 365 ******.********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	2.1E-38	13	240	IPR010369	Protein of unknown function DUF966

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
XARGGGGGEM RKVHIVYFLS HKGRIEHPHL IRVHHHSRNG VRLRDIKRWL SELRGKDMPE 60 SFAWSYKRRY KAGYVWQDLL DEDLITPISD NEYVLKGSEI SSITITNDLS SYGEEEVSKP 120 KSSPSFKVDI KDPTISLVKE TEENSINLST KTSFEIEELP SYYGSETSTE DTTKQQEDYQ 180 FLGPCKHAEV RSQKKTELDS LFDNYLNKNK NDNTNKKDGN QKETSSSKSS PSLNNSCGRL 240 GASHMFLNLL TCGIVDANES AVSVINRRNS TSSMMNVASS KDKNIGQVVK GDKIGGSERV 300 FRGHWPTLEQ QRESRKEGSK KSYNLNDSSN KKTFPVGYKF VNGPYCSQCG RQFNPEKLHT 360 HMKSCRGLKS LIKAAKSKF

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

XARGGGGGEM RKVHIVYFLS HKGRIEHPHL IRVHHHSRNG VRLRDIKRWL SELRGKDMPE  60
SFAWSYKRRY KAGYVWQDLL DEDLITPISD NEYVLKGSEI SSITITNDLS SYGEEEVSKP  120
KSSPSFKVDI KDPTISLVKE TEENSINLST KTSFEIEELP SYYGSETSTE DTTKQQEDYQ  180
FLGPCKHAEV RSQKKTELDS LFDNYLNKNK NDNTNKKDGN QKETSSSKSS PSLNNSCGRL  240
GASHMFLNLL TCGIVDANES AVSVINRRNS TSSMMNVASS KDKNIGQVVK GDKIGGSERV  300
FRGHWPTLEQ QRESRKEGSK KSYNLNDSSN KKTFPVGYKF VNGPYCSQCG RQFNPEKLHT  360
HMKSCRGLKS LIKAAKSKF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023743006.1	0.0	protein UPSTREAM OF FLC-like
TrEMBL	A0A2J6MAN0	0.0	A0A2J6MAN0_LACSA; Uncharacterized protein
STRING	XP_009792716.1	7e-96	(Nicotiana sylvestris)