PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa004836

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

C2H2

Protein Properties

Length: 551aa MW: 60837.8 Da PI: 8.6235

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58691190	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-8737	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	90	112	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Lsa004836 90 FVCEICNKGFQRDQNLQLHRRGH 112 89*******************88 PP
2	zf-C2H2	12.3	0.0005	167	189	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + Lsa004836 167 WKCEKCSKRYAVQSDWKAHSKIC 189 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.8E-5	89	112	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.02E-7	89	112	No hit	No description
SMART	SM00355	0.017	90	112	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	90	112	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	92	112	IPR007087	Zinc finger, C2H2
SMART	SM00355	100	132	162	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	8.1E-5	155	188	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.02E-7	162	187	No hit	No description
SMART	SM00355	130	167	187	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 551 aa Download sequence Send to blast
MKGMFLDDSM SNLTSASNEA SLSSSSNKNE VGTMYPPPQQ MQQSSLASVP INSDNQTQTN 60 KKKRNLPGNP DPEAEVIAMS PKSLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ 120 RSKQEVVRKK VYVCPEPSCV HHEPARALGD LTGIKKHFSR KHGEKKWKCE KCSKRYAVQS 180 DWKAHSKICG TREYRCDCGT LFSRRDSFIT HRAFCGALAG ENARSSSSSS LLLSSNHLPL 240 HLPMTFPLKT EPQHLLQHPQ LNSNIMTNTL QQNHQLPSWF VHHHQQNPTP NNNSSNNLHL 300 PSPSSPPHMS ATALLQKAAQ MGVTMSKPAT GTNTAMVMSL QQQQQQHQQQ QQQHQSILSG 360 PHHHDHMCAP TSLLTAHHHA SGLGNLSSSD NEQQGMLGLG GGFANVNTGC FDHQTDAITT 420 NAMHAHSHLL HTESLACTTG MSTAFQEAYN GMMSSTKSAH STGFQEAFIS ASGGAALNPS 480 KANGGGQNDE LTRDFLGLTG FPPHTVDHHF LSMAGLDQLS TSSPYHHHQQ QQQQQQQDNH 540 SQNQNQLPWH G

Sequence ? help Back to Top

Protein Sequence Length: 551 aa Download sequence Send to blast

MKGMFLDDSM SNLTSASNEA SLSSSSNKNE VGTMYPPPQQ MQQSSLASVP INSDNQTQTN  60
KKKRNLPGNP DPEAEVIAMS PKSLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ  120
RSKQEVVRKK VYVCPEPSCV HHEPARALGD LTGIKKHFSR KHGEKKWKCE KCSKRYAVQS  180
DWKAHSKICG TREYRCDCGT LFSRRDSFIT HRAFCGALAG ENARSSSSSS LLLSSNHLPL  240
HLPMTFPLKT EPQHLLQHPQ LNSNIMTNTL QQNHQLPSWF VHHHQQNPTP NNNSSNNLHL  300
PSPSSPPHMS ATALLQKAAQ MGVTMSKPAT GTNTAMVMSL QQQQQQHQQQ QQQHQSILSG  360
PHHHDHMCAP TSLLTAHHHA SGLGNLSSSD NEQQGMLGLG GGFANVNTGC FDHQTDAITT  420
NAMHAHSHLL HTESLACTTG MSTAFQEAYN GMMSSTKSAH STGFQEAFIS ASGGAALNPS  480
KANGGGQNDE LTRDFLGLTG FPPHTVDHHF LSMAGLDQLS TSSPYHHHQQ QQQQQQQDNH  540
SQNQNQLPWH G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-33	163	230	3	70	Zinc finger protein JACKDAW
5b3h_F	2e-33	163	230	3	70	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	129	KQRSKQEVVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023757558.1	0.0	protein indeterminate-domain 7-like
Refseq	XP_023757559.1	0.0	protein indeterminate-domain 7-like
Swissprot	Q8H1F5	1e-115	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A2J6LRT3	0.0	A0A2J6LRT3_LACSA; Uncharacterized protein
STRING	EOY29917	1e-149	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-108	indeterminate(ID)-domain 2

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]